Panicum virgatum (switchgrass): 120664426
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Entry
120664426 CDS
T07260
Name
(RefSeq) DNA damage-binding protein 1-like
KO
K10610
DNA damage-binding protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03420
Nucleotide excision repair
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120664426
09124 Replication and repair
03420 Nucleotide excision repair
120664426
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120664426
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120664426
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
120664426
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
120664426
TCR (transcription coupled repair) factors
Cul4-CSA complex
120664426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
120664426
NCBI-ProteinID:
XP_039799594
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All DBs
Position
3N:complement(13388870..13396900)
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AA seq
1090 aa
AA seq
DB search
MSVWNYVVTAHKPTSVSHSCVGNFTSPNQLNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG
RIATIELFRPHNETQDFLFIATERYKFCVLQWDAEKSELLTRAMGDVSDRIGRPTDNGQI
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLHGCVKPTIVVL
YQDNKDARHAKTYEVALKDKDFVEGPWSQNNLDNGAGLLIPVPAPLGGVIIIGEETIVYC
NANATFKAIPIKQSIIRAYGRVDPDGSRYLLGDNTGTLHLLVLTHERERVTGLKVEYLGE
TSIASSISYLDNGVVYVGSRFGDSQLVKLNLQADASGSFVEVLERYVNLGPIVDFCVVDL
DRQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGIKGLWSLKSSFNDPYDMYLVV
SFISETRFLAMNMEDELEETEIEGFDAQTQTLFCQNAINDLLIQVTANSVRLVSCTSREL
VDQWTAPAGFSVNVASANASQVLLATGGGHLVYLEIRDAKLVEVKHAQLEHEISCLDLNP
IGENPQYSSLAAVGMWTDISVRIFSLPDLELIRKENLGGEIVPRSVLLCTLEGVSYLLCA
LGDGNLFSFLLNASTGELTDRKKVSLGTQPISLRTFSSKGTTHVFASSDRPTVIYSSNKK
LLYSNVNLKEVNHMCPFNTAAFPDSLAIAKEGELSIGTIDDIQKLHIRTIPLNEQARRIC
HQEQSRTLAFCSFKYNQTSMEESETHYIRLLDHQTFEFLSTYPLDQYECGCSIISCSFAD
DNSVYYCVGTAYVIPEESEPTKGRILVFAVEDGRLQLIVEKETKGAVYSLNAFNGKLLAA
INQKIQLYKWMLRDDGSHELQSECGHHGHILALYTQTRGDFIVVGDMMKSISLLVYKHEE
SAIEERARDYNANWMTAVEMLDDEAYIGAENGYNLFTVRKNSDAATDDERARLEVVGEYH
LGEFVNRFRHGSLVMRLPDSEIGQIPTVIFGTINGVIGIIASLPHDQYVFLEKLQSTLVK
FIKGVGNLSHEQWRSFHNDKKTAEARNFLDGDLIEAFLDLSRSKMEEVSKAMGVPVEELS
KRVEELTRLH
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgtggaactacgtagtcacggcacacaagccgaccagcgtcagccactcctgc
gtcggcaacttcaccagccccaaccagctcaacctcatcatcgcgaaatgtacccgcatt
gagatccatttgcttactcctcagggccttcagcctatgcttgatgtccctatatacgga
aggatcgcgacgattgagctcttccgtcctcataatgagactcaagattttcttttcatt
gctacggagaggtacaaattctgtgttctgcaatgggatgcagaaaaatcagagctcctc
accagagccatgggtgatgtttctgatcgcattggccgtcctactgataatggacagatt
ggaattatcgaccctgactgcagacttattggtcttcacctctatgatggcttatttaag
gttataccatttgacaacaaaggacagctgaaggaagctttcaatatcagacttgaagaa
cttcaagtactggacatcaagtttctgcatggttgtgttaaacctactattgttgtcctc
taccaggataataaagacgcgaggcatgctaagacatatgaagttgcactgaaggacaaa
gattttgttgagggtccttggtcccaaaataatttagacaatggtgctggtttgttaata
cctgtaccagctccacttggtggcgtgataattattggcgaggagacaatagtttactgc
aatgccaatgctacatttaaagctataccaataaaacaatccatcataagagcttatgga
cgggttgacccagatggttctcgatatttactcggtgataatacaggaactctgcattta
cttgtgcttacccatgaacgagaaagggttactggtttgaaagtagaatacttgggggag
acttcaatcgcatcatcaatttcatatctcgataatggtgttgtttatgttggttcacga
tttggcgattcacagctggtaaagctgaacctccaagctgatgcaagtggttcatttgtt
gaagttctggaacggtatgtgaatcttggacctattgtggacttctgtgtggttgacctt
gatagacagggtcagggtcaggtggtcacttgttctggggcatttaaagatggttccctt
cgcgtggttcggaacggtatagggattaatgagcaggcttcagtagaactccaaggtatc
aagggattatggtcattgaaatcttctttcaatgatccttacgacatgtacctagtcgtg
agctttataagtgagacacggttcttggcaatgaacatggaagatgaactagaagaaact
gagatagaggggtttgatgcgcaaacacagaccctcttttgtcaaaatgcgatcaatgat
cttctcatacaggttactgctaattctgttcggttagtcagttgcacctctcgggagcta
gtggatcaatggactgcacctgcaggattttcagtcaatgttgcttcagctaatgctagt
caggttctgctggcaacaggtggtggccatcttgtttacctagaaattagggatgctaag
cttgttgaagtgaagcatgcacagctagaacatgagatttcttgtctcgatttgaaccca
attggggagaatccacagtatagttccctagctgctgttggaatgtggacagatataagt
gttagaatattttcacttccagatcttgaattaataaggaaggaaaatttgggtggagaa
attgttcctcggtctgttctgctgtgcaccttggagggggtttcgtatttgctttgtgct
cttggagatggtaacctgttcagttttctgctgaatgcgagtacaggtgaactcactgat
agaaagaaggtttcccttgggacccaaccaatcagccttcgtacattctcatcaaagggt
accactcacgtgtttgcttcatcagataggccaactgtcatctatagcagcaataagaaa
cttctctatagcaatgtcaatttgaaagaagttaatcatatgtgccctttcaatacagcc
gcttttccagacagccttgcaattgctaaagaaggtgaactctcaattggaacaattgat
gatatccaaaaacttcacatccgtacaatcccccttaatgaacaagcacggcgcatttgc
catcaggagcaatcaaggacactagcattttgcagtttcaagtacaaccagactagtatg
gaggaaagtgagactcattatatccgtctgttagatcatcagacttttgagttcctgtct
acatatcctctagatcaatatgaatgtggctgctccatcattagctgctcatttgcggat
gataatagtgtttattactgtgtcggaactgcatatgttatacctgaggaaagtgaacca
acaaagggccggatccttgtatttgctgttgaagatggaaggttgcaattaatcgtagag
aaggaaactaaaggagcagtttattcgctgaatgcattcaatgggaaattgttggctgct
atcaaccagaagattcagttatataagtggatgttacgtgatgatggttcacacgagctg
caatctgagtgtgggcaccatgggcacatactggccttgtatactcaaacccgcggtgac
ttcattgtggttggagatatgatgaaatcgatatccttgctggtctacaagcatgaggaa
agtgcgattgaagagcgtgctagggattacaatgcaaactggatgactgcagtcgagatg
cttgatgatgaagcctatatcggggcagaaaatggctataacctattcactgtacgcaag
aacagtgatgcagccacagatgacgaaagggccaggctggaggttgttggggagtaccat
ctcggagagtttgtgaataggttccgccatggttcactcgtaatgcgccttccggactca
gagatagggcagattcccacagtcatctttggcacaataaatggggtaattggcatcatc
gcctccctcccacatgaccagtatgtgtttctagagaagctccagtccactcttgtgaag
ttcataaagggtgtcggaaacctgagccatgagcaatggcgttcgttccataatgacaag
aagacggctgaggctcggaacttccttgatggcgacctgatcgaggcatttcttgacctt
agcaggagtaagatggaggaggtgtccaaggctatgggtgttcctgtggaggagctgtct
aagagagtggaagagttgacaaggctgcactag
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