Panicum virgatum (switchgrass): 120664448
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Entry
120664448 CDS
T07260
Name
(RefSeq) RNA polymerase sigma factor sigC-like
KO
K03093
RNA polymerase sigma-I factor
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120664448
Transcription machinery [BR:
pvir03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
120664448
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Motif
Other DBs
NCBI-GeneID:
120664448
NCBI-ProteinID:
XP_039799626
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Position
3N:complement(13667667..13671446)
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AA seq
561 aa
AA seq
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MGLQMIQGRPCSSCCPSSSSSSSSWMMAAHPPKQSPHPLGGRPISSESLAALALHLVLKR
RKYHGLDIATAFASSSSVLQITEKPKAERKVLDDSLDRNLQYDWMDEETLFWLDRNYTNS
NLQYGLLMENLQALETSFSLAGKDLKMLEKDILVHIEHLGALGSFNASMSRATLDTLTQI
SHEPDFSLLDKVIKFDPETPLKEQDAEVIVRSGKSQERKQKRMRASEKASRISVKVNPRR
SKKSRKSSSSQFISEWKNYPGRRRTIVREQSSLLVTIKECANLEKIREDMIKEGQEVSYQ
RWAEAAGLDEAELKSRLHSGYCCRERLIVTTEWLVRYIARTYTGMGTAFDDLLQAGKMGV
LDGAEKFDSRKGCKFSTYVKYWIRKGMLALLAENSGVTLLPARMECIIRKVKEARRAIRY
SQGRNPSDSEIAAVVGVSVANVRLARKCSRKVLSLYSEIGIGQNAKFTEVIPDPSLEAAD
EAIFRAQLRERLLVVLDRLPAREGHVLKLRHGLEDGRCMSLEQIGRIYRVSKEWIRKIEK
SAMAKLRNQDVQRELDDFCSF
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgggtctgcagatgatacaaggcaggccctgctcctcgtgctgtccatcgtcctcgtcg
tcttcctcctcgtggatgatggcggcccatcccccgaaacagtctccccatccattaggg
ggaaggccaatttcttctgaatcccttgcagcactggccttgcatctcgtgctaaaacgc
cgcaaataccatggcctggacattgcgaccgcttttgcatcttcatccagtgtgcttcag
atcacagagaaacccaaggcagaaaggaaggtccttgatgactctcttgacagaaattta
cagtatgactggatggatgaagagacgttattctggctggataggaattacacaaatagc
aatctacagtatggcttgttaatggaaaatcttcaggcattggagactagttttagtttg
gctggcaaagacttgaaaatgctggaaaaggatatccttgtacatattgaacatcttgga
gctctgggatcgtttaacgcgtctatgtccagggccaccctagacaccctaacacagatc
tcacatgaaccagatttctctctgcttgacaaagtcatcaagtttgacccagagactcct
ctgaaggagcaagatgctgaagtaatcgttcggagtggcaagagtcaagagaggaaacag
aaaagaatgagagcatcagaaaaggcctccaggatatctgtgaaggtaaatccaagaaga
tcgaagaaatcacgcaagtctagtagcagtcagtttatatccgagtggaaaaattatccg
ggccggagaaggaccattgtacgtgaacaatcatcattgttagttaccatcaaggaatgt
gcgaaccttgagaagatcagagaggacatgataaaggaggggcaggaggtgagctatcag
aggtgggcagaggcagctggacttgatgaggcagagctgaagagcaggctgcattcgggt
tactgctgccgagagaggttgatagtgaccaccgagtggctcgtccggtacattgcaaga
acatacaccggaatggggacggctttcgacgatctacttcaggctgggaagatgggcgtc
cttgatggtgccgagaagttcgacagccggaaggggtgcaagttctccacatacgtcaag
tactggatcaggaaagggatgctagctctgctcgccgaaaattcaggagtcaccctgctg
ccggcaagaatggagtgcatcatccgcaaggtgaaggaggcgcggcgcgcgatccggtac
agccaagggaggaacccttcggattcagagatcgccgccgtggtcggcgtgtccgtggcc
aacgtcaggctggcgcgcaagtgctctcgcaaggtcctctcactctactcggagatcggg
atcggtcagaatgcaaagttcacggaggtgatcccggacccatctctggaggctgccgac
gaggccatcttccgggcgcagctgagggagaggctgctggtggtgctggacaggctgccg
gcgcgggaagggcacgtgctgaagctgcggcacgggctggaggacggcaggtgcatgtcg
ctggagcagatcggccgcatctaccgcgtgtccaaggagtggatcaggaagatcgagaag
tcggcgatggccaagctcaggaaccaggacgtgcaacgcgagctcgacgacttctgcagc
ttctag
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