Panicum virgatum (switchgrass): 120664456
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Entry
120664456 CDS
T07260
Name
(RefSeq) paired amphipathic helix protein Sin3-like 6
KO
K11644
paired amphipathic helix protein Sin3a
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120664456
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
120664456
REST complex
120664456
Heterochromatin formation proteins
Other heterochromatin formation proteins
120664456
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sin3_corepress
Sin3a_C
Motif
Other DBs
NCBI-GeneID:
120664456
NCBI-ProteinID:
XP_039799632
LinkDB
All DBs
Position
3N:13705442..13713293
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AA seq
893 aa
AA seq
DB search
MVQGMAPSGEPGGEDLHKRALENHRKETVGFLILAKSILSDDAYKDLIKTSQEIVKRSSC
TEGGITAKKCEEILLGVFAGQTHVLKGFHHFLAGRDPFHDNDSQQSVLGVLSFLAKVKES
PCISHEDYNDLIATLTEFIVTKTVGVEDVYRKVKRAMHQCPEFIHIFENFLSDSPRVTVP
NEQSHGSPKTSPTDKAVLCFTPDANHNLDGNRTKTTNMKCNVSQVGHPHDQDHEETEDNF
RQRHTQIILDSFETGNGESLYAEEYEGDKIDPLPDWSSSKENELPPKVNLDMCSRCTTSY
YLLPKNCLTLKSSYRTELGQSIFNDTLVSATSGREDCFKFRTKNHYEENIFKCEDDMFES
DMLLQRYKATADFIGNLQDNIDSSVKIQEYLTPLHRRCIEQLYDEHGLDMLDALWKKIDT
STALVILHSRLNQKIDDLSEARLSMNKMCSSIMANNYHRSLDHRSSSFKQLDKKRMSPKA
LLAEAKEINMARLNNGDKHISSASNNQSSLISENVPKDTELHIHNDINMMVHCATKSCPE
QKPMMIWTKLVQPFVSINCQLTESNGTVAPKQACEHCGLGKNFLRSIPESSFANNIPLSS
TRGGYLVNTPNRSASIHDACQTEIEEGEFIPDVQLGSMLEPGNGAASFSVSDPSEDEMSF
RCPGSSIYDQGNKSGVHHESREGSNVEMGSLAYSKRPAEPLDVNGSIPCCSLVVLLRLHQ
ILCERLLVAKVLSAKARDKAPSRGSVTCDVYAGFKRELFNLLTGSTNSSNFEKYCLTFLG
PKSYVLFTLNEVMGRVIKQLCKICSGAEDQPHEGMRGQDPSKYISRHQHARSSPTRLTNG
SLEQDYHEEGEKGSKPLDDTIKPMQNHFQRRKKRKLEAGIASISQPGADGLIS
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atggtccagggaatggcaccttccggcgagcccggtggtgaagatctgcacaaaagggca
cttgagaaccaccgtaaggagactgtggggttcctcatccttgctaagtccatactcagc
gacgatgcatacaaggatctcatcaagacatcacaggagatcgttaaacgaagttcatgt
actgaaggtggaatcacagccaaaaaatgcgaagaaattctgttgggagtgtttgctggc
caaactcacgtcctaaagggcttccatcactttctggctgggcgtgatcccttccacgac
aatgacagccagcagagcgtattgggtgtactctctttccttgcgaaagtgaaggagtcc
ccttgtatatcccatgaagattacaatgatttaatagccaccctgactgagtttattgtc
acaaagaccgtgggagttgaagatgtttacagaaaggtaaagagagccatgcatcagtgc
ccagagttcatacatatctttgaaaattttctgtctgatagcccaagggtgactgtacca
aatgagcaatctcacggaagtccaaagactagtcctactgacaaggcagttttatgcttt
actccagatgcaaatcataacttggatggtaaccgaacaaaaacaactaatatgaaatgt
aatgtatctcaagtggggcatcctcatgatcaagaccatgaagaaacagaggacaatttc
aggcagagacatactcaaattatccttgattcctttgaaacaggtaatggagaatcactt
tatgcagaagagtatgagggagacaagattgatcccttaccagactggagttcctcaaaa
gaaaatgaattaccccccaaggtgaacctcgatatgtgctcacgttgcactactagctac
tacctgctaccaaagaattgtttaactctaaaatcaagttaccggaccgagctggggcag
tctatatttaacgacacattggtttctgctacctctgggagggaggattgctttaaattc
agaactaaaaatcattatgaagaaaatattttcaaatgcgaagatgacatgtttgagagt
gacatgctattgcagcgctacaaagcaaccgctgactttattggaaatctgcaagacaat
attgacagctctgtgaaaattcaagagtatctaactcccttacataggaggtgcattgaa
caattatacgatgaacatggccttgacatgcttgatgcactgtggaagaaaattgatacc
agtacagctcttgttattctacattctcgtttaaatcagaagatagacgatttatcagag
gcacggttatctatgaataaaatgtgctccagtattatggccaataattaccacagatcg
cttgatcatcgaagctcctccttcaaacaattggataagaagaggatgagcccaaaagct
ttgcttgctgaagccaaagaaattaatatggcaaggttgaacaatggggataaacatatt
tcgtctgctagcaacaatcagtcaagtttgatttcggaaaatgtacctaaagatactgag
cttcacatccacaatgacataaacatgatggttcattgtgccaccaaaagctgtcctgaa
caaaagccaatgatgatttggacaaaattagttcaaccatttgtttctattaattgtcag
ttaacagaatcaaatggcactgtagctcccaaacaagcttgtgaacactgtggtcttggc
aaaaattttctcaggagcatccctgagtcttcgtttgctaataatattcctttatcttcg
acgagaggtggatatcttgtaaatacacccaataggtctgcttctatacatgatgcttgt
cagacagagatcgaggagggtgaattcatacctgatgtccagttaggttccatgcttgaa
cctgggaatggagcagcaagtttcagcgtttctgatcccagtgaagacgagatgagtttt
cggtgcccaggcagtagtatttatgatcaaggtaataaatctggagtgcatcatgaatcg
agagaaggcagcaatgttgaaatgggaagtttagcatattccaagagaccagctgaaccg
cttgatgtgaacggcagtataccttgctgttctctggttgtgctcttgaggcttcaccag
attttgtgtgagagactcctagtagcaaaggttctttcggcaaaagcaagggataaagct
ccttctcgaggttcagtcacttgtgatgtatatgctgggtttaagagggaactctttaac
ctactaacaggctctactaacagttcgaactttgagaagtactgcctgactttccttggg
ccgaaatcctatgtactctttactctaaacgaggtgatgggccgagttatcaagcagctc
tgcaaaatttgttcaggtgctgaagaccagccccatgagggaatgagaggacaagaccca
tccaaatatatatctcgccatcaacatgcaagaagctctccgactcgtctaacaaatgga
tcactggagcaagattaccatgaggagggagagaaaggtagcaagcctctcgacgatact
attaagccgatgcaaaaccattttcagagaaggaaaaagcggaagctggaggcgggtata
gcgagcatatctcagcctggcgcagatggtttaatctcttag
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