Panicum virgatum (switchgrass): 120664490
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Entry
120664490 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120664490 isoform X1
KO
K17925
sorting nexin-13
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pvir04990
]
120664490
Domain-containing proteins not elsewhere classified [BR:
pvir04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
120664490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PXA
Nexin_C
PX
TRAP-gamma
Motif
Other DBs
NCBI-GeneID:
120664490
NCBI-ProteinID:
XP_039799682
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Position
3N:complement(14346478..14354157)
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AA seq
1142 aa
AA seq
DB search
MATAVGAAGVGAPRAQTLRDLVEEGKKRAVLLLVFAFGLAFLMSLTSSSVWFNLPFATAL
IILFRYISLDYDLRRKSTTSTDQDISRPLVKTKSTELKKVLLTEKDEKSDWRSKVNSPPV
EAAFEQFSRHLVTEWVTDLWYSRVTPDKEGPEELIAVVNTVLGEISVRARNVDLISLLTR
DLVDLICNSLERYHFCQAKIGKEKFVNLPSERRDAELKMTLIAENKLHPALFSANAEYKV
LRSLADGLISITVKPQDLQCTFFRCTARELLACAVLRPVMNLANPRFINERIESLALSRA
NKLEKGVEESMEDATTVKQRELPMPSIDEFSALIDHSSPGVELVPFHQGQSNTASDMQPS
RRQNPSNLKLESTNASLIGSSHPLESTSLPSTSHIASGNGFSLHSKSSNRASPDSRGREH
AQPLGISSQRTHQALAPEHLENMWTKGKNYKFENAKHNAKAPVGSDSLGLRSSGQQSVPC
STSISRRQALLSQSEEHRLIRQSTAPTYSNGTNHMPKSLSAEIAEHAGPEDFGVESESSY
ATEDDEITNVTGLDSPVTRVWESKSKGNATSSHIHHPLESSGSHRAKKNRSHVGKLKMSR
SSSGRKRSRSNAQKPPIWQEVDRSSFSVGDDLDILNASGNDSKTDELVEDTEAENMARMF
SSAYSSTFSLASTDSSYSSNYGGANVLQDSYLKLSCEVVGASIVKSGSGMFAVYSISVTD
ANGNSWSIKRRFRHFEELHRRLKEYAQYNLHLPPKHFLSSGLEVPVVRERCKLLDIYLKS
LLQIPIVSSCIEVWDFLSVDSQTYIFTDSLSVIQMLSVSLDERSTGKNRKALNAPGALNG
NLISGDQSFHGHKDNTVSKDLDFAVGDGLRSRKGNVEKNLSNSSGNMTNSVCDTTANLYQ
DNSGSDPEQNDYSFSIDSVNYPKKLRQSETNDTSQMLESDGFSVSPNDWVAPNLSVPLFH
LVDVVFQLQDGGWIRRQAFWVAKQLLQLGMGDTFDDWLVDKIQLLRKGRIIAFAVKRVEQ
ILWPDGIFMTKHPKRKTSPPPPGTQNNGMGNYLSDEQRLEAAHRANFVCELIIDKAPSPL
VSLVGRKDYEKCAQDIYFFLQSPVCLKQLAFELLELLVLAAFPELDGTVKKWHADKQQFR
AL
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggtcggggccgctggcgtgggagcgccgagggcgcagacgctgcgggac
ctcgtggaggaggggaagaagcgggccgtcctgctcctcgtcttcgccttcgggctcgcg
ttcctcatgtccctgacgagctcgtcagtatggtttaacctgccatttgccacagctcta
attattttattccgctacatatcacttgactatgacctccgtagaaagagcacaactagc
acagatcaggatatcagtcgtccacttgtaaaaacaaagagcactgagttaaagaaagtc
cttctgactgaaaaggatgaaaaatctgattggaggagcaaggttaattcacctccagtt
gaagcagcatttgaacagttctcaaggcaccttgtcacagaatgggtaacagatctgtgg
tactcccgtgtaacacctgacaaggaaggtcctgaggaactcatagccgtagttaatact
gtcctgggggagatttcagtccgggcaagaaatgttgaccttatcagtctgctaaccagg
gatttggttgatcttatttgcaatagtttggaacgttatcatttctgtcaagccaagatt
ggaaaagagaagtttgtgaacctaccatcagagcgtcgtgatgctgaactgaaaatgacc
cttatagctgaaaataagttgcatcctgctttattttcagccaatgccgaatacaaggta
ttacgaagtcttgctgatgggttgatctcaatcacagtgaagcctcaagatctacagtgt
actttcttccggtgcacagcgcgagaacttcttgcttgtgcagttttgagacctgtcatg
aacttagcaaatccaaggtttataaatgaaagaattgaatcgttggctctttcacgtgcc
aacaagttggagaaaggagttgaagaatcaatggaggatgctacaactgttaagcaaagg
gaacttcctatgccctctatagatgaattttctgcactaatagaccactcgagtcctggt
gttgaactcgttccatttcatcagggtcagtccaatacagcatcagatatgcaacccagc
agaagacaaaatccatctaatctaaaactagaatctactaatgcttctttgattggtagt
tcgcatccgcttgagtcgacaagtttaccttccacatcccatattgcttcaggtaatggt
ttttctttacattccaaaagcagtaacagagcatctcccgatagtcgtgggagagagcat
gcacagcccttgggtattagttcccagcgaacacatcaagctctggcacctgagcacctt
gagaatatgtggacaaagggaaagaattacaaattcgaaaatgcaaaacataatgcaaaa
gcacctgttggatccgattctctaggcttgcgttcttcaggacagcagtcggttccctgc
agcacttcaatttctcgaaggcaagcacttttatctcaatctgaggaacatcgcttgata
agacaatcaactgcacctacatattcaaatggcaccaaccacatgccgaaaagcctatct
gcagaaattgcagaacatgctggaccagaagactttggagtagagagtgagagttcatat
gccactgaggatgatgaaatcaccaatgtgactggacttgattctcctgttacccgagta
tgggaaagcaaaagtaaaggaaatgccacctcatcacatatacatcacccacttgagtct
tctggttcccatagagcaaagaagaatagaagtcatgtgggaaaactgaaaatgtcgaga
tcttcttcaggaagaaaaaggtcaaggtcaaatgctcaaaagcctcccatctggcaagaa
gtagatagatcctctttctcggttggggatgatttggacatactaaatgcatctggaaat
gattcaaagacagatgaattagttgaggatactgaggcagaaaatatggctagaatgttt
agtagtgcatattcttcaacattttccttggcatcaactgactcttcttattcttcaaat
tatggtggtgccaatgtgctacaagattcttatctgaagttaagttgcgaggtggtagga
gctagcattgtgaaaagtgggtctggcatgtttgccgtgtattctatttctgtgactgat
gccaatgggaatagttggtccatcaaaaggaggtttcgtcatttcgaagaactgcatcga
cgtttgaaagagtatgcccagtacaaccttcatttgcctccaaaacactttctctcatca
ggtttagaggttcctgttgttcgagagagatgcaagctgcttgacatatatctgaagagc
cttcttcaaattcctattgtttcaagctgcatagaagtctgggattttctcagtgtggac
tcacagacatatattttcacagactctctctcagttatccagatgttgtcagttagttta
gatgaaagatcaactgggaagaatagaaaagcattgaatgctcctggagctttgaatgga
aatcttatttctggagatcaatccttccatggacataaagacaatactgtgagtaaggat
ttggacttcgctgtcggtgatggtttgagatctaggaaagggaatgtggaaaagaactta
tcaaatagttctggcaacatgacaaatagtgtttgtgacacaactgccaatctttatcaa
gataattctggaagtgacccggagcagaacgattattcgttttcaatagattcagtaaat
tatcctaagaagctgcgtcaaagcgaaaccaatgacacatctcaaatgttggagtctgat
ggattctctgtatctcctaatgattgggtggcaccaaatcttagtgtccccttgtttcat
cttgttgatgtggttttccagctccaagatggaggttggatcaggcgtcaagcattttgg
gtagcaaagcaactactgcaattgggaatgggagacacctttgatgactggcttgttgac
aaaatccagttacttaggaaaggaaggataattgcttttgctgttaagcgtgttgaacaa
attctctggcctgatgggattttcatgacaaaacatccaaagagaaaaacatcaccacca
cctcctggcactcagaacaatggcatgggcaactatctaagtgatgaacaacggctagaa
gctgctcaccgtgcaaattttgtctgtgaattaataatagataaagcgccatctccacta
gtgagtctggttggtcgaaaggattatgaaaaatgtgctcaggatatctacttctttctt
cagtccccggtttgtttgaagcagctagcattcgagctcctagagctgcttgttcttgct
gcatttccagagttggatggcactgtgaagaagtggcatgccgataaacagcagttccgt
gccctgtaa
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