Panicum virgatum (switchgrass): 120664495
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Entry
120664495 CDS
T07260
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120664495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120664495
03036 Chromosome and associated proteins [BR:
pvir03036
]
120664495
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120664495
Coactivators
SAGA/TFTC/STAGA complex
120664495
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
120664495
STAGA complex
120664495
TFTC complex
120664495
SAGA complex
120664495
SLIK complex
120664495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_WDR41
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_VPS8
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_HPS5
Tricorn_2nd
Beta-prop_WDR35_TULP_N
RecX_HTH3
Beta-prop_IP5PC_F
PALB2_WD40
Beta-prop_ACSF4
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
120664495
NCBI-ProteinID:
XP_039799687
LinkDB
All DBs
Position
3N:complement(14382986..14391221)
Genome browser
AA seq
657 aa
AA seq
DB search
MEDEEMEKKVQQYLQRKGFRLTELALQEERNRLTTSVVSDVTLARSDNDPGRYHDGYSRL
RTWAYSSLDQYKHELLRVLYPVFIHCFMDLVAEGHMQEARSFFHKFREDHEVMHSRDLQK
LEGVLSPSHLEEMELARSLRQNKFKIKLCEYSYELLLQYLQKTQALVVLGVINEHITFEV
SPGQPSLISDDADVVALIGTSKDLAKQINQKEVHWGLLEDSVEERMEKALAESDKVEAES
KDAGTEDNKKRNAEGGKQGASLKKSKKDKLVGATGKNVRTETSMVSVAPRVKAELTLPTT
PVEVEQSILEDLRNRAQLNSVALPSVIFYTFLNTHNGLNCSSISQDGSLVVGGFSDSSVK
VWDMSKIGQPAKTSSLQGENGSSQGERMSTIDEGKKTYTLFQGHSGPVYSAAFSPFGDFL
LSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASASHDRTARIWSMDKIQ
PLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQSGECIRMFIGHRSMVLSLAMS
PDGRYMASGDEDGTIMIWDLSTGRCVSPLLGHSSCVWTLAFSCEGALLASGSADCTVKLW
DVASSTKALKTEDTKGSTANRLRLLKALPTKSTPVYSLRFSRRNLLFASGALSLDTS
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgaggagatggagaagaaagtgcagcagtacctgcagcgcaaggggttccgc
ctcaccgagcttgcgttgcaggaggagcgtaaccgcctcaccacctccgtcgtctccgac
gtcacgcttgccagatctgacaatgatccgggaagataccatgatggatatagtagacta
agaacatgggcatatagttctcttgatcaatacaagcatgaattactccgtgtcctttac
ccagtctttatccattgcttcatggatctcgtggcagagggacatatgcaggaagctcgg
tcatttttccataagtttcgggaagatcatgaagtaatgcattcaagggatcttcagaag
ctggaaggtgtcctctccccttcacatctggaggaaatggaactggcccgatctttaagg
caaaataaatttaaaattaaattatgcgagtattcatatgaattgcttctccagtatctc
cagaaaacacaagcccttgttgtgcttggtgtaatcaatgagcacataacttttgaagta
tctcctgggcagccctcgttaatttctgatgatgcggacgttgttgctctgattggaaca
agtaaggacttggcaaagcagataaatcagaaggaagtgcattgggggttgcttgaagat
tctgttgaagagcgaatggagaaggcactagcagaatctgataaagttgaagctgaaagc
aaggatgctggcacagaagataacaagaaaagaaacgcagaaggtggaaagcaaggtgct
tctcttaagaagagcaaaaaggataagcttgtaggtgcaactggaaaaaacgtcagaact
gaaacaagcatggtttctgtggcacctcgtgtgaaagcagagctaactctgccaacaacg
cctgtcgaagttgaacaatcaattcttgaggatctgcgaaaccgtgcacaactgaatagt
gtggcattgccgtctgttatcttctacacattcctcaatacacataatggattaaactgc
tcatcgatatcacaagatggatctttggttgtgggtgggttttctgattcgtcagtgaag
gtttgggatatgtcaaagattggtcaaccagcaaaaacatctagtttacagggggagaat
ggatcttcccagggtgaacgcatgtcaacaatagatgaggggaaaaaaacttatacacta
ttccaaggtcattctggaccagtttattcagcggcctttagcccgtttggggattttctc
ttgtcatcatcttcagattcaacaattagactttggagtaccaagctgaacgccaatctt
gtctgctacaaaggacacaattatccagtttgggatgtccaattcagcccagttggtcat
tactttgctagtgcttcacatgacaggactgctagaatctggtcaatggataaaattcag
cctttgcggataatggctgggcatctttctgatgttgattgtgtccagtggcatgtaaac
tgtaactacatcgccactggttctagcgacaaaactgtaagactatgggatgttcagtca
ggtgaatgtatacggatgtttattggtcataggagtatggttttatcactggcaatgtca
cccgatggacgatacatggcctctggagatgaagatgggaccatcatgatatgggatcta
tctactggtcgctgtgtttcaccactactaggccacagctcttgtgtgtggacacttgct
ttcagctgtgaaggggcattgcttgcatctggatcagccgactgtactgtaaaactatgg
gatgtcgcttccagcacaaaggccctgaagacagaggacaccaaaggcagtacagctaac
cgactgaggttgcttaaagctctccctacaaaatcaactcctgtttatagcctgcggttc
tctcggcggaaccttctatttgcatccggtgctctctcgctggacacgtcgtaa
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