Panicum virgatum (switchgrass): 120664648
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Entry
120664648 CDS
T07260
Name
(RefSeq) E3 SUMO-protein ligase MMS21-like
KO
K22756
E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120664648
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120664648
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
120664648
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
120664648
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
zf-Nse
Motif
Other DBs
NCBI-GeneID:
120664648
NCBI-ProteinID:
XP_039799865
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Position
3N:16135482..16139488
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AA seq
245 aa
AA seq
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MSSVTTKLSNAANIASSEAQALVAGIRKALGNMKSLAVEYERDGKSDKVQKLEEMVMEVV
ASYEDCAALTQAIKAVPEVYQPSDQPMDFETLIEAEVIKIKEASSASVQNHPFFRQFRES
VWNVHHAGQPMPGEEQEDIVMTSTQMSILNVTCPLTGKPVIELVDPVRCVDCRHIYEKGP
IMHYIRSKKPPQCPIAGCPRVLQIGKVVCDPLLRIEIDELRSSEPAVANATNVEDFTDVL
DEDDE
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcggtgaccacgaagctttccaacgccgccaacatcgcctcgtcggaagcgcag
gccctcgtcgcgggtatccgcaaggcgctcggcaacatgaagtccctcgccgtcgagtac
gagagagacggcaagtccgataaggtgcagaaacttgaggaaatggtgatggaggtggtg
gcttcgtacgaggactgcgcggccttgacccaggcgattaaggcggtgcctgaagtgtac
cagccctctgatcagccaatggatttcgaaacattgatcgaggcagaggtaatcaagatc
aaggaagcctcatcagcatcagtacagaaccacccgttctttcgacagttcagggagtct
gtttggaatgttcatcatgcaggtcagccaatgcctggtgaggaacaggaggacattgtc
atgactagcacccagatgagcatcttaaacgtcacatgtccattaactgggaagccagtg
attgagttggtagatccagttcgctgtgtggattgcaggcacatatatgaaaagggccca
ataatgcattatataaggtccaaaaaaccaccacagtgtcctattgcaggctgccccaga
gtcttacaaattgggaaggttgtctgtgatcccctcctccgcattgaaatcgatgagctg
cgttcatcagagcctgctgttgccaatgcaacaaatgtagaggactttaccgatgtactt
gatgaagatgatgaatga
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