KEGG   Panicum virgatum (switchgrass): 120664765
Entry
120664765         CDS       T07260                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1-like
  KO
K14962  COMPASS component SWD2
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    120664765
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120664765
   03036 Chromosome and associated proteins [BR:pvir03036]
    120664765
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     120664765
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     120664765
    COMPASS/SET1 complex (yeast)
     120664765
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40 WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd WD40_Gbeta EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd WDR55 ANAPC4_WD40 Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_Aladin WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_SPT8 NBCH_WD40 DSE1_N eIF2A ASA1 TRM82_WD Beta-prop_NOL10_N Beta-prop_ACSF4 Tricorn_2nd WD40_RFWD3 Beta-prop_VPS8 PAC11 WD_LRWD1 BCAS3_WD40 Beta-prop_NWD2_C Beta-prop_IFT122_2nd AC_1 DUF6406
Other DBs
NCBI-GeneID: 120664765
NCBI-ProteinID: XP_039800031
LinkDB
Position
3N:complement(17898665..17901971)
AA seq 318 aa
MAAALSQLDDEIVHGMAIGAVFTDYAGKINCLDFHRKEDLLVTSSEDDSIRLYNITSATL
LKTTYHRKHGADRVCFTHHPSSILCSSRYNLESAESLRYLSLYDNRCLRYFKGHKDRVVS
LCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPSVAYDQQGLVFSVAMEGGAIK
LFDSRSYDKGPFDTFLVGGDTAEVSDIKFSNDGKSMLLTTTNNHIYVLDAYGGDKKCGFS
LEPSPNVTNEAAFTPDGQYVISGSGDGTLHAWNINTVQEIACWNSHIGPITALKWAPRRA
MFATASTALTFWIPSQSN
NT seq 957 nt   +upstreamnt  +downstreamnt
atggcggcggcgttatcgcagctggatgacgagatcgtccacggcatggccatcggcgcg
gtcttcaccgattacgccgggaaaataaactgcctcgatttccaccgcaaggaggatctc
ctcgtcacctccagcgaggacgactccatacgcctctacaacatcactagcgctacgttg
ctaaagactacatatcataggaaacatggtgctgaccgtgtctgttttactcatcatccg
agttctatcttatgctcatcaagatacaatctagagtctgcagagtcactccgttatctg
tcattgtatgacaaccgttgcttaagatacttcaaagggcacaaagacagggttgtctca
ttatgtatgtcacccgtcaatgatagctttatgtcaggatcacttgatcacagtgtcaga
atatgggatcttcgtgtaaatgcttgtcagggcatactaagacttcgaggcaggccttct
gttgcatatgatcagcaaggacttgttttttctgtagcaatggaagggggagctattaag
ttatttgattcccgatcatatgataagggtccatttgatactttcttggttggcggagat
acagctgaagtttctgacatcaaatttagcaatgatggcaagtctatgcttttgacaacc
actaacaaccatatctatgttctggatgcatatggaggggacaagaagtgtggctttagt
ttagaaccatctcccaatgtaacaaatgaagctgctttcactccagatggccagtatgta
atttcaggatctggtgatggaacactgcacgcttggaacatcaatacagtacaagagatt
gcttgttggaacagtcatattggtcctatcacagctttgaagtgggcccctcgtcgagca
atgtttgcaactgcatcaactgccctaaccttctggattcccagccaatcgaattag

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