Panicum virgatum (switchgrass): 120664785
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Entry
120664785 CDS
T07260
Name
(RefSeq) chaperonin CPN60-like 2, mitochondrial
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120664785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120664785
03110 Chaperones and folding catalysts [BR:
pvir03110
]
120664785
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120664785
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120664785
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
120664785
Messenger RNA biogenesis [BR:
pvir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
120664785
Chaperones and folding catalysts [BR:
pvir03110
]
Heat shock proteins
HSP60 / Chaperonin
120664785
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
120664785
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
120664785
Exosomal proteins of other body fluids (saliva and urine)
120664785
Exosomal proteins of breast cancer cells
120664785
Exosomal proteins of colorectal cancer cells
120664785
Exosomal proteins of bladder cancer cells
120664785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
ATP-synt_DE
Motif
Other DBs
NCBI-GeneID:
120664785
NCBI-ProteinID:
XP_039800057
LinkDB
All DBs
Position
3N:18132372..18137152
Genome browser
AA seq
579 aa
AA seq
DB search
MYRAAASAISRSSSVLRKQLARGGGGEPQRLWARGYAAKEVAFGVGARAAMLQGVNDLAD
AVKVTMGPKGRTVIIDGSHKGPKITKDGVTVAKSVEFEDSAKNVGANLVKQVAEATNKVA
GDGTTCATVLTQAILMEGCKAVAAGVNVMDLRNGINKAINSITAHLKSKAWKINSPEEIN
QVATISANGEKEIGDLISKAMEKVGKDGVITIVDGKTLDNELEAVQGMKLSRGYISPYFV
TDEKTQKCEMENPLILIHDKKISNMNSLLPVLEISIKNRRPLLIVAEDVEGEALSMLVLN
KHRAGLKVCAVKAPGFGDNRRHNLDDMAVMTGGEVVSEERGLDLGKVQLQMLGTAKKVTV
SLDDTIILDGGGDKKQIEERCQQLRESIDTSTAMFDKEKAQERLSKLSGGVAVLKIGGAS
EAEVGEKKDRVTDALNAAKCAVEEGIVPGGGVALLYASKELDKISTANEDEKIGVQIIKN
ALKAPLMTITANAGIDGAVVIGKLTEQDDLSLGYDAARGEYVDMIKAGIIDPVKVIRTAL
QDAASVSLLMTTTEAAVSELPATKARIASRMPQMSGMDF
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgtaccgggcggcggcgtcggcaatttcaaggtcctcctcggtgctgcgcaagcagctc
gcgcggggcggcggcggggagccgcagcggctgtgggcgcgcgggtatgcggcgaaggag
gtggccttcggcgtgggcgcccgcgccgccatgctgcagggcgtcaacgacctcgccgac
gccgtcaaggtcaccatgggccccaaggggcgcaccgtgattatcgatgggtcccataaa
ggccctaaaatcacgaaggatggggtcactgttgcgaagagcgtggagttcgaggatagt
gcgaagaatgttggtgcgaacctggtgaagcaagttgctgaagctacgaacaaggttgct
ggtgatggtaccacttgtgcaactgtacttacacaggcaattcttatggaaggatgcaag
gctgtggcagctggtgtcaatgttatggacttgcgcaatggtataaacaaggcgataaat
tccatcactgctcacctcaaaagtaaagcatggaagatcaattccccagaagaaataaac
caggtagcaaccatttctgccaatggtgaaaaggaaattggagatctgatatcaaaggct
atggaaaaagttggaaaggatggagtcattactattgttgatggcaaaacattggacaat
gagcttgaagcagtacagggaatgaagctgtccagaggatacatatctccttactttgtg
actgatgagaagactcaaaaatgtgagatggagaaccctctgattcttatccatgacaag
aaaatctcaaacatgaattctctccttccagtattagaaatttctatcaagaatcgcagg
ccccttctcattgtggctgaggatgtagaaggagaagctctatcaatgcttgtactgaac
aagcatcgcgctggactcaaggtatgtgctgtcaaagctcctgggtttggtgataacaga
aggcacaacctggatgatatggctgtgatgactgggggagaggttgttagcgaggaacga
ggcttggatcttggcaaagttcagctacaaatgcttggcactgccaagaaggttactgta
tctcttgatgatactatcatcctagatggtggaggtgacaaaaagcagatagaggagagg
tgccaacagcttagagaatctattgacacaagcactgctatgtttgacaaagaaaaggcc
caagagcgtttatcaaagttatctggaggtgttgctgtcctcaagattggtggagctagt
gaagctgaagttggtgagaaaaaagatagggtaacagatgctctaaatgctgcaaagtgt
gctgtggaggagggcatcgtgccaggtggtggagttgcccttctatatgcttcgaaggag
ctcgacaagattagcacagcaaatgaggatgaaaagattggagttcaaattatcaagaat
gctttgaaggctcccttgatgaccattactgcaaatgctggcattgatggggctgtagtc
atcgggaagctaactgaacaagatgaccttagtttgggctatgacgcagcaagaggtgag
tatgtagatatgattaaggctggaatcattgatccagtgaaggtgatccgcactgcactt
caagatgctgcaagtgtttccttgctgatgacaaccacagaagctgccgtttctgagctc
ccagcaacgaaggccagaatagccagccgcatgccgcaaatgagtggaatggatttttga
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