KEGG   Panicum virgatum (switchgrass): 120664801
Entry
120664801         CDS       T07260                                 
Name
(RefSeq) GTP-binding protein yptV1-like isoform X1
  KO
K07897  Ras-related protein Rab-7A
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir04144  Endocytosis
pvir04145  Phagosome
pvir04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    120664801
   04145 Phagosome
    120664801
   04148 Efferocytosis
    120664801
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pvir04131]
    120664801
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pvir04147]
    120664801
   04031 GTP-binding proteins [BR:pvir04031]
    120664801
Membrane trafficking [BR:pvir04131]
 Endosome - Lysosome transport
  Rab GTPases and associated proteins
   Rab GTPases
    120664801
Exosome [BR:pvir04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   120664801
  Exosomal proteins of other body fluids (saliva and urine)
   120664801
  Exosomal proteins of colorectal cancer cells
   120664801
  Exosomal proteins of bladder cancer cells
   120664801
GTP-binding proteins [BR:pvir04031]
 Small (monomeric) G-proteins
  Rab Family
   Rab7/9 [OT]
    120664801
SSDB
Motif
Pfam: Ras Roc Arf MMR_HSR1 GTP_EFTU ATP_bind_1 RsgA_GTPase AAA_22 AAA_16 Septin nSTAND3 AAA_7 ATPase_2 AAA_24 MCM cobW PduV-EutP NACHT AAA_5 NB-ARC
Other DBs
NCBI-GeneID: 120664801
NCBI-ProteinID: XP_039800078
LinkDB
Position
3N:complement(18344830..18347155)
AA seq 311 aa
MQARKRSPTAHSIRRRRLAHSSARSPMESWRRRTLLKVIVLGDSGVGKTSLMNQYVNKKV
SQQYKATIGADFLTKEVLIEDKLCHLAGDPPLVRTWIPARCTTDKRKRAMAAVVTVCCSP
LMQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVKRSFNTLSTWHDEFLNQASPSDPKH
FPFILVGNKIDLDGGNKRMVSFLNVQTFQYRLEILCNRFVASGLSHSFLRRKQGNGVPPR
AISRILKPPQKRTTMLTPLFYASPSSLWHMSMTKTFTSRQLQNKSRLLNRQPDVRARGSH
FLALPDSYCIQ
NT seq 936 nt   +upstreamnt  +downstreamnt
atgcaagcgaggaagcgatcgcccaccgcgcacagcatccgtcgccgcagactcgctcac
tcaagcgcccgctcgcccatggagtcgtggcggaggcggacgctgctcaaggtcatcgtc
ctcggcgacagcggggtcggcaagacgtcgttgatgaaccaatatgtgaacaagaaggtt
agccagcagtacaaggcgacgatcggagctgatttcctcaccaaggaggtgctcattgaa
gataagctttgtcaccttgcaggtgatcctcctcttgtgcgaacttggattcctgcacgc
tgcactactgataagaggaaacgagccatggcagctgtcgtcacagtgtgttgctctcct
ctgatgcagatatgggacacggcagggcaggagaggttccagagccttggcgtagcgttc
taccggggcgcagattgctgcgtgctggtttatgatgtcaatgtcaagagaagcttcaat
acactcagtacctggcatgatgagttcctcaatcaagcaagcccatcagatcctaaacat
ttcccgttcattttggttgggaacaagattgatttagatggtggaaacaaaagaatggtt
agtttcctgaacgtgcaaactttccaatacagacttgaaatactctgcaatcgctttgtg
gcctctggcctttcccacagctttctgagaagaaagcaagggaatggtgtgcctccaagg
gcgatatcccgtattttgaaacctccgcaaaagaggaccacaatgttgacaccgcttttc
tatgcgtcgccaagctcgctttggcacatgagcatgaccaagacatttacttcaagacag
ttgcagaacaagtcccggttactgaacagacaaccggatgtgcgtgctagaggtagccat
ttcttggcactaccagacagttactgtatacaataa

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