Panicum virgatum (switchgrass): 120664894
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Entry
120664894 CDS
T07260
Name
(RefSeq) chaperone protein ClpB1-like
KO
K03695
ATP-dependent Clp protease ATP-binding subunit ClpB
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
pvir03110
]
120664894
Chaperones and folding catalysts [BR:
pvir03110
]
Heat shock proteins
HSP100
120664894
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_2
AAA_lid_9
AAA
ClpB_D2-small
Clp_N
AAA_5
AAA_22
AAA_16
Sigma54_activat
AAA_18
nSTAND3
AAA_14
AAA_7
bpMoxR
IstB_IS21
ATPase_2
RuvB_N
AAA_28
TniB
TsaE
NACHT
RNA_helicase
Zeta_toxin
DUF815
NBD_SMAX1
AAA_19
Mg_chelatase
ResIII
DNA_pol3_delta2
AAA_25
ABC_tran
DUF87
DUF2987
CENPH
T2SSE
Spectrin_Anc-1
DASH_Spc19
DUF4426
AAA_13
Motif
Other DBs
NCBI-GeneID:
120664894
NCBI-ProteinID:
XP_039800212
LinkDB
All DBs
Position
3N:19300580..19304309
Genome browser
AA seq
913 aa
AA seq
DB search
MNPDNFTHKTNEALVAAHETASEAGHAQITPLHLAAALAADKGGILRQAITGASGGDGAA
GDSFERVLANALKKLPSQSPPPDSVPASTALIKAIRRAQSAQKKRGDSHLAVDQLLLGLL
EDSQISDCLKEAGVSAARVRAELEKLRGGEGRRVESASGDTNFQALKTYGRDLVEQAGKL
DPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLLDVRL
IALDMGALVAGAKYRGEFEERLKAVLKEVEEAAGKVILFIDEIHLVLGAGRTEGSMDAAN
LFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVFVAEPSVVDTVSILRGLKEKY
EGHHGVRIQDRALVVAAQLSARYIMGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLER
KRIQLEVELHALEKEKDKASKARLVEVKKELDDLRDKLQPLTMKYRKEKERIDEIRKLKQ
RREELMFSLQEAERRMDLARVADLKYGALQELDAAISKLEGETGENLMLTETVGPEQIAE
VVSRWTGIPVTRLGQNDKERLVGLADRLHQRVVGQTEAVNAVAEAVLRSRAGLGRPQQPT
GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVARLIGAPPGYVGHEE
GGQLTEQVRRRPYSVILFDEVEKAHVSVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTS
NLGAEHLLAGMVGKNSMKVARDLVMQEVRRHFRPELLNRLDEIVIFDPLSHEQLRKVARL
QMKDVAVRLAERGIALAVTDAALDIILSLSYDPVYGARPIRRWIEKRVVTQLSRMLIQEE
IDENCTVYIDAAPAKDELAYKVDRSGGLVNAETGQKSDILIQVPSAAGRNDAAQAVKKMR
IMEEDDEDGMDEE
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccgacaacttcacgcacaagaccaacgaggcgctggtggcggcgcacgagacg
gcgtcggaggccggccacgctcagatcacgccgctgcacctggcggcggcgctggcggcc
gacaagggcggcatcctgcgccaggccatcacgggggcgtcgggcggcgacggggccgcc
ggggactcgttcgagcgcgtgctggccaacgcgctcaagaagctgccgtcgcagtccccg
ccgccggactcggtcccggcgtccacggcgctgatcaaggccatccgccgcgcgcagtcc
gcgcagaagaagcgcggggactcccacctcgccgtcgaccagctgctgctcggcctgctt
gaggactcgcagatctccgactgcctcaaggaggccggcgtgtccgcggcgcgggtgcgc
gccgagctcgagaagctccgcggcggggagggccgccgcgtcgagtccgcgtccggcgac
accaacttccaggcgctcaagacctacggccgcgacctcgtcgagcaggccgggaagcta
gaccccgtcatcggccgcgacgaggagatccgccgcgtggtgcgcatcctctcgcgccgc
accaagaacaacccggtcctcatcggcgagcccggcgtgggaaagacggccgtcgtggaa
ggcctcgcgcagcgcatcgtccgtggcgacgtgcccagcaacctcctcgacgtccgcctc
atcgcgctcgacatgggcgcgctcgtcgccggcgccaagtaccgtggcgaattcgaggag
cggctcaaggccgtgctcaaggaggtcgaggaggcagcggggaaggtcatcctcttcatc
gatgagattcacctcgtcctcggcgcgggcaggacggaggggtccatggacgcggccaac
ctgttcaagcctatgctcgcgaggggccagctccggtgcatcggcgccaccacgctggag
gagtaccgcaagtacgtggagaaggacgccgcgttcgagcggcggttccagcaggtgttc
gtcgccgagccgagcgtggtcgacaccgtcagcattctgagggggctcaaggagaagtac
gaggggcaccatggtgtgaggatccaggaccgcgccctcgtcgtcgccgcgcagctttcc
gcaaggtacatcatgggtcggcacctgcctgacaaagccatagacttggtggacgaggcc
tgcgccaatgtcagggtgcagctcgacagccagccggaggagattgataacctcgagagg
aagaggattcagcttgaagttgagctccacgcgctcgagaaggagaaggacaaggccagc
aaagcccggctggttgaggtcaagaaggaattggacgatttgagggacaagctgcagccc
ctgaccatgaagtacaggaaggagaaggaaaggatcgacgagatcaggaagctgaagcag
cgccgcgaggagctgatgttcagcctgcaggaggccgagcgccggatggacttggcccgt
gtggccgacctcaagtacggcgccctccaggagctcgacgccgccatctccaagctcgag
ggtgaaacaggggagaacctgatgctcactgaaaccgtcggccctgaacaaattgcagag
gtggtgagccgatggacgggcattccggtgacccggctcgggcagaacgacaaggagagg
ctggttggcctggcagacaggctgcaccagagggtggtcggccagacggaggccgtgaac
gcagttgcagaggcggtgctgaggtcgagggccggtctcggccggccgcagcagcccacc
gggtccttcctcttcctgggtccgactggtgtgggcaagactgagctcgccaaggccctc
gccgagcagctgttcgacgacgagaacctgcttgtccgcattgacatgtccgagtacatg
gagcagcactcggttgctcgactgatcggagcaccacctggctatgttggccatgaggag
ggtggacagctgactgagcaagtgaggaggaggccgtacagcgtgatcctcttcgacgag
gtggagaaggcgcacgtgtcagtgttcaacaccctgctccaggtgctcgacgacggaagg
ctgaccgacgggcaaggcaggacggtggacttcaggaacaccgtgatcatcatgacatcc
aacctcggcgccgagcaccttctcgccgggatggtgggcaagaactccatgaaggtcgct
cgcgatctcgtcatgcaggaggtgaggcggcacttccgccctgagctgctgaaccggctc
gacgagatcgtgatcttcgatcccctgtcccacgagcagctgaggaaggtcgctcgcctt
cagatgaaggacgtggccgtccgtcttgccgagaggggcatcgcgctggccgtcaccgac
gctgccctcgacatcatcctttcactgtcttacgatccggtctatggcgcgcggcccatc
aggaggtggatcgagaagagggtggtgacgcagctgtcgaggatgctgatccaggaggag
atcgacgagaactgtacggtgtacatcgacgccgcgccggccaaggacgagctggcctac
aaggtggaccggagcggcgggctggtgaacgcagagacgggccagaagtcggacatcctg
atccaggtcccgagcgccgccggcaggaacgacgccgcgcaggccgtgaagaagatgcgg
atcatggaggaggacgacgaggacggcatggacgaggagtag
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