Panicum virgatum (switchgrass): 120664980
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Entry
120664980 CDS
T07260
Name
(RefSeq) multisubstrate pseudouridine synthase 7-like
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120664980
Enzymes [BR:
pvir01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
120664980
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
120664980
Prokaryotic type
120664980
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
PUS7L_N
Motif
Other DBs
NCBI-GeneID:
120664980
NCBI-ProteinID:
XP_039800320
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All DBs
Position
3N:complement(20364882..20370442)
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AA seq
683 aa
AA seq
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MARSSSLSEAEAGISCFASSLPGFRGVLKHRYSDFIVHEVARDGTLVQLTSFDLPTECVD
VKEEEKAAPSADADHSQALESFRALCGDADCEALRGLLERAAAGGDSDVSPVILSPDADK
AHRSEVHNFFKKNLKFLVTDTVEHSDGVQRCIRVRLGSGAGGGRGGGGSGRGRKRKNMGA
SDWRDDRPFDSRGSSNWSDHVGKFLRFHLYKENKDTQEALGVIGKMLGLQPRSFGFAGTK
DKRAVTSQQVTVFKVQANRLAALNNRLFGIKVGNFCYVKEGLVLGQLMGNRFTITLRGVI
AESEDVIKAAADGLGKNGFINYYGLQRFGSGSVPTHLVGAALLRGEWKAAVNLILDPREG
ERDDINELRKHYKEHGDIDKALRNFPRHLVAERAILQCLKKCPGNYLQALKGIPRTLRMM
YVHSYQSYLWNHAASMRVEKYGISQVVEGDLVYNKESPPEESTSVDIAETDDGHTNSSEI
DLCSEAQPEETIQSVKIVDSGDLLKGMYTFDDVVLPLPGSQAIFPGNAVAEIYHEMAKKD
GISLTENARGVKEFSITSMKGGYRRLFQRPIDFQWELMTYTDESSSLAETDLDVLSRTKP
KEANELVTSDQAQDKLEETSDTSMPTNGSGSLENKPTGSSDTAPTKLAIKLAFTLPASCY
ATMAIRELLKTSTSVAYQKTLSC
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgctcgagctcactttccgaggccgaggcgggcatttcctgcttcgcctcctcc
ctccccggcttccgtggcgtcctcaagcaccgctactccgacttcattgtccacgaggtc
gcccgcgacggcaccctcgtccagctcacctcgttcgatctcccaaccgagtgcgtggat
gtgaaagaggaggagaaggcggcgccctcggctgacgcggaccactcgcaggccctcgag
tcgttccgcgcgctctgcggcgacgcggactgcgaggcgctgagggggctcctcgagagg
gcggcggcggggggtgatagtgatgtctcgcctgtcattctctcgcctgacgccgacaag
gctcacagatcggaggtgcataacttttttaagaagaacctcaagttccttgttacggac
acggtggaacacagtgatggtgtccagaggtgcatcagggtgcggttggggtcaggagct
ggtggtggaaggggcggcggtggtagcgggagaggaaggaagcggaagaacatgggtgct
tctgattggagagatgaccggccatttgatagtagagggtcgagtaattggtcagatcat
gtcggaaagttcctgaggtttcacctttacaaagagaataaggacactcaagaagcatta
ggagtaataggaaaaatgttaggacttcagccacgttcatttgggtttgcagggacaaag
gataagcgtgctgttacttcacagcaggtaactgttttcaaggtacaagccaatagattg
gctgctcttaataatcggctatttgggattaaagttggaaacttctgttatgtgaaggag
ggacttgttcttggtcaactcatgggaaatcgatttacaattactctgaggggcgtcatt
gcagaatccgaagacgtaataaaagctgctgctgatggcttaggaaagaatggatttatc
aactactatggtttgcagcgttttggaagtggttcagttccaacacaccttgttggtgct
gctttgctcagaggagagtggaaggctgctgtaaacttgattcttgatccaagggaagga
gagcgtgatgacataaatgagctgcgcaaacattacaaggaacatggtgacattgacaag
gcactgaggaacttccctcgacaccttgtagctgagagagctatacttcagtgtctgaag
aaatgccctggtaactatctacaggcacttaagggtatcccaagaacattgagaatgatg
tatgtacatagttaccaaagttacctgtggaatcatgctgccagcatgagagtggagaag
tatggcatttcacaggttgtagaaggtgacttggtttataacaaagaaagccctcctgaa
gaatctacttctgtagatatcgcagaaactgatgatgggcatacaaattcatctgagatt
gatctatgttctgaagcgcaaccagaggaaaccatccagtctgttaagatagttgattct
ggagatttgttaaaggggatgtacacatttgatgatgttgtccttcctttgcctggttca
caagcaatatttcctgggaatgcagttgctgagatataccatgaaatggccaaaaaggat
ggtattagcttgacggagaatgctcgcggtgtcaaggagttctcgattacaagcatgaaa
ggaggttaccgtcgactgttccagcgccctattgattttcagtgggagctcatgacttac
acagatgagagttcgtctttagcagaaactgatttggatgttctgtccagaaccaagcct
aaagaagcaaatgagcttgtaactagcgatcaggcacaggataagttggaggagacttca
gatacctccatgccaactaatgggagcggctcactagaaaataagcctactggcagctca
gatacagcaccaacaaaattggctataaaattagcatttactttaccagcatcatgttat
gctacaatggctatcagggagcttctgaagacttctacttcagttgcatatcagaaaaca
ctcagctgctaa
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