Panicum virgatum (switchgrass): 120665007
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Entry
120665007 CDS
T07260
Name
(RefSeq) cyclic nucleotide-gated ion channel 4-like
KO
K05391
cyclic nucleotide gated channel, plant
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
120665007
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pvir04040
]
120665007
Ion channels [BR:
pvir04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
120665007
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GFIT
Motif
Pfam:
cNMP_binding
Ion_trans
Motif
Other DBs
NCBI-GeneID:
120665007
NCBI-ProteinID:
XP_039800354
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Position
3N:complement(20818979..20822921)
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AA seq
699 aa
AA seq
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MPSDLSARSIVAFLLTTSPSGDARRTTDQVEATTPQQGPANNAGGNSGRGRRHRRAHWRL
GLGGLGAAWALDPRARWVREWNRAYLLACAAGLIVDPFFLYTVSVSGPLMCLFLDGWLAA
AVTALRCAVDAMHVWNVATQLRLWRAAARNKRAVDGGSPGDEEQQAAAAEEEEGAEAARK
LPADARSKKALMLDFFVILPVMQVVVWVAAPAMIRAGLTTPVMTVLLLAFLLEYLPKICH
AVRFLRRMQGQSGYVFGTIWWGIVLNLMAYFVTAHAVGACWYLLGVQRASKCLKEQCRLQ
AGGCARGAVACAAPLYYGGAAPAAGAGAAGERVAWARNAQARGACLAGGDSYQYGAYKWT
VMLVSNPSRLERVLLPIFWGLMTLSTFGNLESTTEWLEIVFNIATITGGLVLVTMLIGNI
KVFLNATTSRKQAMHTRLRAVEWWMRRKNLPRAFRHRVRQFERQRWAATRGVDECQIVRD
LPEGLRRDIRYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFPKGETIVREGDAVQRM
LFIVRGHLRCSQALRNGATSSCTLGPGNFSGDELLSWCLRRPFRERLPTSSATLVTLEST
EAFGLDAADVRYVTRHFRYTFAKDAVRRSARYYSPGWRTWAAVAVQLAWRRYKHRKTLAS
LSFIRPRRPLSRCSSLGEEKLRLYTAILTSPKPTQDHDF
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgccaagcgatctctccgcgcgctcgatcgtcgccttcctcctcacaacgtcgccttcc
ggtgacgcgcggcggactacggaccaagtggaggcgacgacgccgcagcagggaccggcg
aacaacgccggcggcaacagcggccggggtcggcggcatcggcgcgcgcactggcgcctg
ggcctcggcgggctcggcgcggcgtgggcgctggacccgcgggcgaggtgggtccgggag
tggaaccgcgcctacctcctggcctgcgcggcagggctcatcgtcgacccgttcttcctg
tacaccgtgtccgtgagcggcccgctgatgtgcctcttcctcgacggctggctggccgcc
gccgtcaccgcgctgcgctgcgccgtggacgccatgcacgtgtggaacgtcgcgacgcag
ctccgcctgtggcgcgccgcggcgcggaacaagcgcgcggtggacggcggcagcccgggc
gacgaggagcagcaggcggcggccgcggaggaggaggagggcgccgaggccgcgcgcaag
ctcccggcggacgcgaggtccaagaaggccttgatgctggacttcttcgtcatcctcccc
gtgatgcaggtggtggtgtgggtggcggcgccggcgatgatccgcgcggggctgacgacg
ccggtgatgacggtgctgctgctggcgttcctgctcgagtacctgcccaagatctgccac
gcggtgcgcttcctccgccggatgcagggccagtccggctacgtcttcggcaccatctgg
tggggcatcgtgctcaacctcatggcctacttcgtcaccgcccacgccgtgggcgcgtgc
tggtacctgctcggggtccagcgggccagcaagtgcctcaaggagcagtgccggctccag
gcgggcgggtgcgcgcgcggcgcggtggcctgcgccgcgccgctctactacggcggcgcc
gcccccgccgccggcgccggcgccgccggcgagagggtcgcgtgggcccggaacgcgcag
gcccggggcgcgtgcctcgccggcggcgacagctaccagtacggcgcgtacaagtggacg
gtgatgctggtgtcgaacccgagccggctggagcgcgtgctgctccccatcttctggggc
ctgatgacgctgagcacgttcgggaacctggagagcacgacggagtggctggagatcgtg
ttcaacatcgcgaccatcacgggcgggctggtcctggtcaccatgctcatcggcaacatc
aaggtgttcctgaacgcgaccacgtcccggaagcaggcgatgcacacgcggctccgcgcc
gtggagtggtggatgcggcgcaagaacctgccgcgggcgttccggcaccgggtgcgccag
ttcgagcggcagcggtgggccgccacgcgcggcgtggacgagtgccagatcgtgcgcgac
ctccccgagggcctccgccgcgacatcaggtaccacctgtgcctggacctcgtccggcag
gtcccgctcttccagcacatggacgacctcgtgctcgagaacatctgcgaccgggtcaag
tccctcatcttccccaagggagagaccatcgtgagggagggcgacgcggtgcagcggatg
ctgttcatcgtgcggggccacctgcggtgcagccaggcgctccggaacggcgcgacgagc
agctgcacgctggggccgggcaacttcagcggcgacgagctgctgtcgtggtgcctgcgg
cggccgttccgggagcggctcccgacgtcgtcggcgacgctggtgacgctggagagcacg
gaggcgttcgggctggacgccgcggacgtcaggtacgtgacgcggcacttccggtacacc
ttcgccaaggacgcggtgcggcgcagcgcgcggtactactcgcccgggtggcgcacctgg
gccgccgtcgccgtgcagctggcgtggcgccgctacaagcaccgcaagacgctggcgtcg
ctctccttcatccgcccgcgccgcccgctgtcgcgctgctcctcgctcggggaggagaag
ctccgcctctacaccgccatcctcacctcgcccaagcccacccaggaccacgacttctag
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