Panicum virgatum (switchgrass): 120665016
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Entry
120665016 CDS
T07260
Name
(RefSeq) probable indole-3-acetic acid-amido synthetase GH3.4
KO
K14487
auxin responsive GH3 gene family
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
120665016
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Motif
Pfam:
GH3
GH3_C
GH3_M
Motif
Other DBs
NCBI-GeneID:
120665016
NCBI-ProteinID:
XP_039800366
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Position
3N:20955751..20958244
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AA seq
624 aa
AA seq
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MPEAPGAMREAAAAAAPEAHREALEYIERVTAGAAQVQRGVLAEILAQNAPAEYLRRLGV
AGDAPGAAEAFLRAAPLVTYEDILQDVLRIANGDTSPILSGKPIREFLTSSGTSGGERKL
MPSIADEMDRRSLLYSLLMPVMSQAVPGLNKGKCMYLYFVKAESRTPAGLPARPVLTSFY
RSRHFLERPHDPYTVYTSPDEAVLCVDAYQSMYAQLLCGLVHRADVLRVGAVFASGFLRA
IRFLEKHWQRLCRDIRAGALNAEITDRSVRAAVERVLLRADPALADAVEAECARPSWEGI
IRRVWPNTKYIDVIVTGAMAQYIPTLEFYGGGLPLTCTMYASSECYFGINLNPMCKPSEV
AYTLIPTMGYFEFLPVGSDAAEPQPHHRDLVDLVDVKLGHEYELVVTTYSGLYRYRVGDV
LRVAGFKNQAPMFSFVRRKNVVLSIDSDKTDEAELHAAVAGAVQHLAPFGASLVEYTSYA
DAAAIPGHYVLFWELRGGGATPVPASVFEDCCLAVEEALNSVYRQGRAADRSIGPLEIRV
VSEGTFDKLMDYALARGASINQYKAPRCVRPGPLVELLDGRVQARYLSPKCPKWSPGGGK
QWSSNAAAAVTMAADINAGGAVVA
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgccggaggcgccgggagccatgcgagaggcggcggcggcggcggcgcccgaggcgcac
cgcgaggcgctcgagtacatcgagcgcgtgacagcgggcgcggcccaggtgcagcgcggc
gtgctggcggagatcctggcgcagaacgcgccggccgagtacctgcgccgcctgggcgtc
gcgggggacgcgccgggcgccgccgaggcgttcctccgcgccgcgccgctcgtcacctac
gaggacatcctccaggacgtcctgcgcatcgccaacggcgacacctcgcccatcctctcc
ggcaagcccatccgcgagttcctcaccagctccggcacgtcgggaggggagcggaagctg
atgccgtcgatcgccgacgagatggaccggcgctcgctgctctacagcctgcttatgccg
gtcatgagccaggccgtgccggggctgaacaagggcaagtgcatgtacctctacttcgtc
aaggccgagtcgcgcacgccggccggcctcccggcgcgcccggtgctcacgagcttctac
cggagccgccacttcctcgagcgcccgcacgacccctacaccgtgtacaccagccccgac
gaggccgtcctctgcgtggacgcctaccagagcatgtacgcgcagctgctctgcggcctc
gtgcaccgcgccgacgtgctccgcgtgggcgccgtcttcgcgtcgggcttcctccgcgcc
atccgcttcctggagaagcactggcagcgcctgtgccgagacatccgcgccggcgcgctc
aacgccgagatcaccgaccgctccgtgcgcgccgccgtggagcgcgtgctgctccgcgcc
gacccggcgctcgccgacgcggtggaggccgagtgcgccaggccgtcgtgggagggcatc
atccggagggtgtggcccaacaccaagtacatcgacgtcatcgtcaccggcgccatggcg
cagtacatccccacgctcgagttctacggcggcggcctgccgctgacgtgcaccatgtac
gcctcctccgagtgctacttcggcatcaacctcaacccgatgtgcaagcccagcgaggtc
gcctacaccctcatccccacgatgggctacttcgagttcctccccgtcggctccgacgcc
gccgagccccagccccaccaccgcgacctcgtggacctcgtcgacgtcaagctcggccac
gagtacgagctcgtcgtcaccacctactccgggctgtatcgctatcgcgtgggcgacgtg
ctgcgcgtggccgggttcaagaaccaggcgcccatgttcagcttcgtccgccgcaagaac
gtggtgctgagcatcgactccgacaagaccgacgaggcggagctgcacgcggcggtggct
ggcgcggtgcagcacctggccccgttcggcgcgtcgctggtggagtacacgagctacgcg
gacgcggccgccatcccgggccactacgtgctcttctgggagctccgcggcggcggcgcg
acgcccgtgccggcgtcggtgttcgaggactgctgcctcgccgtggaggaggccctgaac
agcgtctaccgccagggccgcgccgccgaccgctccatcgggccgctggagatccgggtg
gtctcggagggcacgttcgacaagctcatggactacgcgctcgcccgcggcgcgtccatc
aaccagtacaaggcgccccggtgcgtgcgcccgggccccctggtggagctgctcgacggc
cgggtgcaggcccgctacctgagccccaagtgccccaagtggagccccggcggcggcaag
caatggagcagcaacgccgccgccgccgtcacgatggcggccgacatcaatgccggaggg
gcggtcgtcgcctga
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