Panicum virgatum (switchgrass): 120665040
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Entry
120665040 CDS
T07260
Name
(RefSeq) zinc finger CCCH domain-containing protein 36-like isoform X1
KO
K27809
protein FRIGIDA-ESSENTIAL 1
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120665040
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
120665040
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GFIT
Motif
Pfam:
Torus
zf_CCCH_4
zf-CCCH
zf-CCCH_4
zf-CCCH_9
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
120665040
NCBI-ProteinID:
XP_039800392
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Position
3N:21373849..21386639
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AA seq
599 aa
AA seq
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MASAGGGVGATDEIPEVEMDVVERAPEETGRVGWKRVRDSPSALGSHGFYGVTTAEKKPM
LQPHNVDKSLSKAGNSNLLHINSDGASKMGGRYLPGTDGLGIPDSNALRLNISSPGEHLE
NETKWAAKICTFHTQGWCKEGNSCAFLHEREGGLGFAKAGLLAPPDFENHRGSKEGSQVH
HQSNLKVPQFKYAEGSSKDEHYRSLIHVYGEDNERLAHIADKRNSTTPGISQGLRGTGSI
EQSLVVHEKNHKPFMRHHTGLSPETYLDGRGILLDGGDFQSGMVRRNGFSNAHVARTYID
VNTLNSGHQFRSSGLSISSDPFQLSEKLSAYDATTDNLSNTHKKEHHSSHASYSSHSLTG
FRNPGYAISETSRPALLSSSSYEPYMSAGPLSPIKDEVWVTSVPFVPSYSFPDSTTPPGS
RYDPFVDCIEPPEVGDTDNLKSSNLSFSTSSQHTNQYVITDESLNRNDKLTRNMSTKGAN
GPAYLIASDRGHSSSLDDNNRLKARDKKIGAASNDEKARDFRFHLAEHIKELIKPIWKEG
NLSKDAHKLVVKKSVEKIVDSIRPNQMPTTEELIAKYITTSGSKIEKLVKAYVDRHRTT
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgccggcggtggggttggggcgacggacgagatcccggaggttgaaatggac
gtcgtggagcgcgctccggaggagacggggcgggtcggatggaagagggtcagggattcg
cccagcgccctgggttcccacggtttttatggagtgactactgccgagaagaaaccaatg
cttcaacctcataatgttgataaaagtttgagcaaagctggcaacagtaaccttctacac
atcaattctgatggtgcttctaaaatggggggtcgatacctacctggtacagatggcttg
gggattccagattctaatgctctgagattgaatatctcatctcctggtgaacacctggag
aatgaaaccaaatgggctgccaaaatatgtacctttcacactcaaggttggtgcaaggaa
ggaaacagttgtgcctttcttcatgaaagagaaggtggtctgggttttgcaaaggctggt
ctgcttgcaccacctgattttgaaaatcatagaggttccaaagaagggtcccaagtacat
catcaatccaacttgaaagtgcctcagttcaaatatgcagagggttcatcaaaagatgag
cattatcggagccttattcatgtgtatggcgaagataatgagaggctggcacatattgct
gataaacgaaactctaccactccagggatttcacaagggctccgtggtactggcagtatc
gagcagagtctagtagttcatgagaaaaaccacaaacctttcatgagacaccatactggt
ttgtcacctgaaacctatttggatggcagaggtatcttgctagatggaggggactttcaa
tctggtatggtcaggagaaatggcttcagtaatgcccatgttgcaagaacttatattgat
gtgaacaccttaaattcaggtcatcagtttcgatcatctggcctgtctatttcatctgat
cctttccaactcagtgagaagttgtcagcctatgatgcaacaacagataatctttctaac
acacataagaaagaacatcattcaagccatgcctcatatagttcacatagcttaacagga
tttagaaatccaggctatgctatctctgaaacttccagacctgcattactctcaagcagt
tcatatgaaccttatatgtcagctggacccctttctccaatcaaggatgaggtctgggta
acatcagtgccttttgtaccgtcttatagttttcctgatagtacaacacccccagggagt
cggtatgacccattcgttgactgtattgaacctcctgaagttggagatacggataatctg
aagtcctccaatctgtccttcagtacttcaagtcagcatacaaatcagtatgtaattact
gatgaatcactgaaccgcaatgacaagctaaccaggaatatgtctaccaaaggagcaaat
ggacctgcatacttgattgcatctgatagaggacacagctctagcctggatgataataat
aggttgaaagctcgtgacaaaaaaattggtgcagctagtaatgatgagaaagcaagagat
ttccgttttcatttggcagaacatataaaggagttgatcaaaccaatatggaaggaaggt
aatctgagtaaagatgctcataaactggtagtgaaaaaatctgttgaaaaaattgttgat
tcgattaggccaaatcaaatgccaactactgaagagttgattgccaaatatattaccacc
tctggatcaaagatagaaaaacttgtgaaggcgtatgttgataggcatcgtacaacgtga
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