Panicum virgatum (switchgrass): 120665060
Help
Entry
120665060 CDS
T07260
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120665060
03036 Chromosome and associated proteins [BR:
pvir03036
]
120665060
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
120665060
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
120665060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
SPT6_acidic
YqgF
Spt6_S1
Tex_central_region
SH2
HTH_44
HHH_9
Tex_N
HHH_3
Motif
Other DBs
NCBI-GeneID:
120665060
NCBI-ProteinID:
XP_039800419
LinkDB
All DBs
Position
3N:complement(21701793..21710483)
Genome browser
AA seq
1645 aa
AA seq
DB search
MGRTVLSDDEEDDIEEVDEEEPRSSRRDRDDDDDDEEDDEEGQDEFEKDGFIVDDEDEED
EEGEEEEHKSDDEKRKKKRKKKRESEDFMLDEDDYMLLQDNNITGISRPKPGNKFKRLKK
AGRESEMDEHGLSDDDGTGKKRTGEERVEYSLFGDAQGNAVSYEEDIIEDDQQVDETEEP
DDEEDEMADFIVEEDEIDGNGQVVRRKKFKKKVPRQAAGVSSSALQEAQDIFGDVDDLLA
RRKQEMEREAINSGELRGKRLEDEFEPFILAEKYMTTKDEQIKENDVPERIQLSEELTGY
PPTDTTMVEEESVWIHSQLTGDGFLSLFGNEHVNKDIDQKDIVNVLNMLHVNKFEIPFIA
MYRKEMCPSLLRDPDSNDEDNKNPDSNDQVNKNPDSDDQDKKKGAPKMRWHKLLWAVQTL
DRKWLLLQKRKVALELYYEKRFDDEKRRIDDVTRQELNRQLYNSIIEALKDAKSEKEVED
VDAKFNLHFPPGEVEEEGQFKRPKRKSLYSICHKAGLWEVASQFGRSAEQLGHHLTLTKI
PEAGELDSGKRSPEEVAANFTCAMFETAQDVLRGARHMAAVEIGCEPIIRKHIRGIFMNK
AVVSTSPTHEGNTIIDPYHQLSGVKWLREKPLCKFVDAQWLLIQKAEEEKLLKVTVKLPE
NAKKELMSDARENYLSDCVSKSAQLWDEQRKMILDDAFFNFLLPSMEKEARSLLTAKAKH
WLHMEYGKQLWNKVTVAPWKKKDADKKDTDIDLDDESELRVMACCWGPGKPATTFVMLDS
SGELVDVLYAGSISNRSQGVAETQRKKNDQQRVLKFMTDHQPNVVCVGASNYNCRQLKDD
IYEVIFRIVEDHPRDVNPQMENLAIVYGDESVPRLYENSRISSDQLPGQSGIVKRAVALG
RYLQNPLAMIATLCGPGKEILSWKLQALEQFLTPDEKYEIVEQVMVDATNQTGFDVNLAA
SHEWHFSTLQFIAGLGPRKASALQKDLVREGSIFSRKELVKPLGRKVFMNASGFLRVRRS
GAAAASAQIIDLLEDTRIHPESYVLAKNLAKDVYSEDAPHEVNEMDDDEQEMAIEYVREH
PRFLKHLVIDEYIKSIPEEFRKKETLEDIRKELLCGFSDWRTLYTEPSPDEEFWMLSGET
EDTISEGRIVQVTVRNIQESKIICTFDSGLKAIVMADNYSDEGFDPASSQLHEGDVLTGK
IRNVNKNRFMVYLTCKASEMRRRPFSRGDQDPYYHEQDMTSQTVEDKARKQKELAKKHFK
PRMIVHPHFQNLTAEEAMQFLSDKEPGEKVIRPSSRGPSFLTLTLKISDGVFAHKEITEG
GKDHKDITSLLRLGKTLTIDNETFEDLDEVIDRYVDPLVGHLKSMLSYRKFRKGLKNDVD
ELLRAEKAENPMRIVYSFGISHEHPGTFILSYIRSTNPHHEYVGLYPKGFRFRKRDFDNI
DRLVSYFQKNIDKPPPDAGPSMRNVAAMVPMKNSAWGSGGGVAGANDGWKGDGNSDRDRS
FSGRSGGRFDSRNNSGGRGRGRGRGRGNFGNDDNGGGWSGGGGGNSGGWTDNIGSGGSSW
GVGGNGGGSGGGDAAGWGGAGGDNNSGGGGWGTVVGGTDGAGGGSGGGWGATAGGSNDSG
WGSAKKAVSAQDGGSGWGSGGGGGW
NT seq
4938 nt
NT seq
+upstream
nt +downstream
nt
atggggcgcacggtgctctccgatgacgaagaagacgacatcgaggaggtcgacgaggag
gaaccgcggtcctcgcggagggatagggacgatgatgacgacgacgaggaggatgacgaa
gaagggcaggatgaatttgagaaggatggattcatagttgatgatgaagatgaggaggat
gaggagggagaggaagaggaacataagagtgatgatgagaaaaggaagaagaaaaggaag
aagaaaagggaatcagaagacttcatgcttgatgaggatgactacatgttgctgcaggat
aataacatcactggcatcagtcggccaaagcccggaaataagtttaaacgcttgaagaaa
gctggaagggaatctgaaatggatgagcacggtttgtcagatgatgatggaactgggaaa
aaacgtactggcgaggagagagttgagtacagtttatttggtgatgctcaaggtaatgct
gtgtcctatgaggaagacatcattgaggacgatcagcaggtagatgaaactgaggaacct
gatgatgaggaggatgaaatggcagatttcattgtggaggaagatgaaattgatgggaac
ggccaagttgtaagaaggaagaaatttaaaaagaaggtaccacgtcaagctgctggtgta
tcatcatctgccctgcaagaggcccaagacatatttggtgatgttgatgacttgctagca
cgaagaaagcaagaaatggagagggaggctattaactctggtgagttgaggggcaagagg
cttgaagatgagtttgagccatttattcttgcagagaagtatatgacaacaaaagatgag
caaataaaagaaaatgatgtgcctgagaggatacagctgtctgaagaattgactggctat
cctccaacggataccacaatggttgaggaagaaagtgtatggattcacagccaactaact
ggggatgggtttctgtccctttttggtaatgagcacgtgaacaaggatattgaccagaag
gatattgttaacgtcctgaacatgttgcatgtcaacaaatttgaaattccattcattgca
atgtatagaaaagagatgtgcccaagcctgttaagagatcctgattccaatgacgaggat
aataaaaatccggattccaatgaccaggttaataaaaatccagattccgatgaccaggat
aaaaaaaagggtgcacccaaaatgaggtggcataaactactctgggcagttcagacctta
gacagaaagtggctacttcttcagaagcgcaaggtcgctttagagttgtattatgaaaag
agatttgatgatgagaaacggaggatagatgatgtcacaaggcaggaactaaaccggcaa
ctatataattccatcattgaagcgctgaaggatgctaaatctgagaaagaggtggaagat
gttgatgcaaaattcaatttacactttcctccaggtgaagttgaagaagaaggacaattt
aaacggccaaaaaggaaatccttgtacagtatctgtcacaaggcagggttatgggaggtt
gccagccaatttggacgtagtgctgagcaattaggtcaccatctgacattaacaaaaata
cctgaagcaggcgagcttgatagtgggaaacgttcgcctgaagaggttgctgcaaatttc
acttgtgcaatgtttgaaacagcacaagatgttcttcgtggtgcgagacacatggcagca
gtcgagataggttgtgaaccaattataagaaagcatattcgaggcatcttcatgaataaa
gcagttgtgtcaacgagtcccacacatgagggcaatacgatcatagatccatatcatcaa
ctatctggtgtaaagtggctgagagagaaaccactgtgcaagtttgtagatgcacagtgg
ctacttattcagaaagcggaggaagaaaagctcctcaaggttaccgtaaaactgcctgaa
aatgcaaagaaagaactcatgtctgatgcacgcgagaattacctaagtgactgtgtcagt
aagtctgcacaattgtgggatgagcaacggaagatgatactggatgatgccttctttaat
ttcctccttccatcaatggaaaaggaggctcgatctcttttgacagcaaaagccaaacat
tggctccatatggaatatgggaaacagttgtggaacaaggttactgttgctccttggaag
aagaaggatgcagacaagaaggatactgacattgatttggatgatgaatcggagttgaga
gttatggcctgctgctggggtcctgggaagccagcaaccacctttgtaatgctagactcg
tcaggagaattggttgatgttctatatgcaggttctatcagtaacaggtctcaaggagtt
gctgaaacgcagcggaagaagaatgaccagcagcgagttttaaagttcatgactgatcat
caaccaaatgttgtatgcgtaggagcgtcaaactacaattgcagacaactcaaggatgat
atttatgaggttatttttagaattgtagaagatcatccaagagatgttaacccacaaatg
gaaaatttagccatcgtctatggtgacgagtctgtgcctcgcttgtatgagaactcacga
atatcttcggatcaacttcctggacaatcaggtattgtgaagcgtgctgtggcgcttgga
cgttatcttcagaatccattggcaatgattgcaacactgtgtggacctggaaaagagata
ctctcttggaaactgcaagctcttgaacaatttcttactcctgatgagaagtatgagatt
gttgagcaagtaatggttgatgcaacaaatcagacaggttttgatgttaatcttgctgct
agccatgagtggcatttctcgactttacaatttattgctggtctgggcccgcgcaaagct
tcagctttgcagaaagatctggtaagagagggatcaatttttagccgcaaggagcttgta
aagcctctaggcaggaaagtattcatgaatgcttctgggttcttacgtgtacggcggagt
ggtgcggctgcagccagtgctcagatcattgatctgcttgaggatacaaggatccatcct
gaatcatatgtattggcaaaaaatttggctaaggatgtctattctgaggatgcaccacat
gaagtgaatgagatggacgacgatgaacaagagatggcgattgagtatgttagagaacac
ccacgttttcttaagcatcttgtcattgacgaatatataaagagtattccagaggaattt
cgtaaaaaggaaacactggaggacataaggaaggaactgctgtgtggtttctctgactgg
aggaccctgtataccgagcctagcccagatgaagaattctggatgctttctggtgaaact
gaggataccatatctgagggaaggattgttcaagtaactgttcgtaatatacaagagagc
aaaattatatgcacctttgattctggtttgaaggccatagttatggcagacaactattct
gacgagggatttgatccagcatcatcgcagttacatgaaggtgatgtgttaactggcaaa
attaggaatgttaataaaaataggttcatggtttacctaacatgcaaggctagtgaaatg
aggagaagaccattctccagaggtgatcaagacccttactatcatgaacaagacatgacc
tcacagactgtagaggataaggctcggaagcaaaaggaacttgcaaagaaacatttcaag
ccccggatgattgtccaccctcactttcagaacctgacagctgaagaagccatgcagttc
ttgtcagataaagagcctggtgagaaggtcatccggccaagttctcggggaccatcattt
ttgactcttaccttgaaaatttctgatggtgtttttgcacacaaggagataactgaaggt
gggaaggatcacaaagatataacaagtttgcttcgcctaggaaaaacactaacaattgac
aatgaaacttttgaagaccttgatgaggttatagacagatatgtggacccgttggtaggg
cacctcaaaagcatgctctcctaccgtaaattcaggaaagggttaaaaaatgatgttgat
gagttgttaagagcagagaaggcagagaaccctatgagaatagtatatagctttggcata
tctcacgaacatcctggcacctttatactgtcgtatattaggagtacaaatccacatcat
gagtatgttgggttatacccaaagggcttcagattccggaagagagactttgacaacatt
gatcgccttgtgtcatatttccagaagaatattgataaaccaccaccagatgccggacca
tccatgcgaaatgttgctgctatggtgcctatgaaaaattcagcttggggttccggtggt
ggtgtagctggtgcaaatgatggatggaagggagatggcaatagtgatagggatagatca
ttttctggaagatcaggagggaggtttgattcaaggaacaattctggtggtcgtggacga
ggacgtgggcgtgggcgtggcaactttggcaatgatgacaatggtggaggctggagcggt
ggtggcggtggcaacagtggaggctggacagataacattggcagtggtggctcctcctgg
ggtgttggtggtaatggcggaggctctgggggtggggatgctgctggatggggtggagct
ggcggtgataacaacagcggcggaggcggttggggaacagtggttggtggtactgatggt
gctggtggtggaagtggagggggctggggagcaactgctggtggctctaacgactcaggg
tggggcagcgctaaaaaagccgtttcagcacaggatggtgggagcggctggggctctggt
ggcggcggtggctggtga
DBGET
integrated database retrieval system
