Panicum virgatum (switchgrass): 120665118
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Entry
120665118 CDS
T07260
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120665118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120665118
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120665118
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120665118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
120665118
NCBI-ProteinID:
XP_039800491
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All DBs
Position
3N:complement(22268657..22275184)
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AA seq
654 aa
AA seq
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MSGPLNSNISGAASNLRDSTGRSFASSFSGQSGSLPGFHHSGSHNIHGNLNLTNISGSLA
PRNNSMAGIPSPGVQQPGGSISSGRFPSNNLQASMSQIPHGHSGISNRGGMNVGGNPGFS
SSMNAIGGSIQGLSSNLANVGNRNSAGFSSSMNAIGGSIQGLSSNLANVGNRNSAPGLAA
SPVLGNLGPRITNSGNIVGGSNIGRSISSAGLSMPGIASRMNLSGNSGSGAINIQGSNRM
SSMLQQASPQFMNLLGSSYPTPGGSLSQNQVQAGNSSLGSSGILHDGSSGDNAPFDINDF
PQLTGRPNSAGGGQGQYGSLRKHGVSVNAIVQQNQEFSIQNEDFPALPGYKGSSSDYAMD
MHHKDHLHENVNIMQAQHYPMARSSGFNLGSSYPPRQHQQSANSVQNAGLESIGLRPANS
PSPSSNSGVYEQFMQQYHQPQSQNSLRLQATSGPQPFKDQSQKSVQGTQATPDPYSLLGL
LSLIRLKEPGPTALALGIDLTSLGLNLNSQDNLYKTFGSPWSNEPAKGEPDYQIPACFSA
EPPPPLQPLHFQKFHPLTLFYIFYSMPKDVAQLYAANELYNKGWFYHKDYRVWLTRAPNA
APLVKTPLHERGSYICFDPNIWDTVHKDNFVLHYEAVEKRPVLPSAAQNLRREL
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggaccactgaactcaaacattagtggggccgcttcaaaccttcgagattcaaca
ggaaggtcatttgcatcatcattttctggtcaatctggatcacttccaggtttccatcac
tcaggttcacacaacattcatggaaatctcaatctcacaaatatctctggatcattagca
ccaagaaataattcaatggcaggtatcccgtcaccaggggttcaacagcctggtggtagt
atttccagtggccgtttcccctcaaataatcttcaagcttccatgtctcagattcctcat
ggtcattctgggatcagcaacagaggaggtatgaatgttgggggaaatcctggatttagt
agtagcatgaatgctattggtggttcaatacaaggtttatcctcgaacttggctaatgtg
ggtaaccggaattctgctggatttagtagtagcatgaatgctattggtggttcaatacaa
ggtttatcctcgaacttggctaatgtgggtaaccggaattctgctcctgggttggcagct
tctccagttttggggaatttaggcccacgaataacaaattctgggaatattgtgggtggg
agcaatattgggagaagtataagctctgcagggctgtctatgcctgggatagcgtctcgc
atgaatttaagtggcaactctggaagtggggctatcaatattcaaggatccaaccggatg
agcagtatgcttcaacaagcatctcctcaattcatgaacttgcttggaagttcttaccca
acacctggagggtcattgtctcagaatcaagtacaggcaggaaacagttctttaggatct
tctggaattctacatgatggaagctcgggtgacaatgccccatttgatataaatgacttc
cctcagctaactggtcggcctaattctgctggaggtggtcaaggccaatatgggtcactg
cgaaagcatggcgtaagtgtgaatgcaatcgtgcaacaaaatcaggaattcagcattcag
aatgaagattttccagctttaccaggatataaaggtagttcctcagattatgctatggat
atgcatcataaggaccaccttcatgagaacgtaaatattatgcaagcacaacattatcct
atggctagatcatctggctttaacttgggaagcagctatccgccccgtcaacatcagcag
agtgctaattcagttcaaaatgctgggctggaaagtattggattaaggcctgcaaattct
ccaagtccatcatcaaattcgggagtttatgaacaatttatgcagcagtaccatcaaccg
cagagtcaaaattcacttcggttgcaggcaacttcaggcccacaaccattcaaggatcag
agccaaaaatctgttcagggaacacaagccacaccagatccatatagtttacttggattg
ttgagtctaataagattgaaagagcctggaccaacagctcttgctttaggaattgatttg
acatcactagggttgaatttgaactcccaagataatctttacaagacatttgggtctcca
tggtcaaatgagccagctaaaggagaacctgattatcagatccctgcttgtttctctgct
gagccaccaccaccgctacaaccattacattttcagaagtttcaccccttgacattgttc
tacatcttctacagcatgccgaaggatgttgctcagttgtatgctgctaatgaattatac
aataaagggtggttttaccacaaagactaccgtgtctggctcacaagagctcctaatgcc
gcgcctcttgtgaaaactccacttcatgaacgagggtcctacatttgttttgatccaaac
atctgggatactgtccataaggacaacttcgttctccattatgaagcagtggagaagaga
cctgtccttccttcagccgcccaaaatcttagacgagaactataa
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