Panicum virgatum (switchgrass): 120665213
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Entry
120665213 CDS
T07260
Name
(RefSeq) probable DNA helicase MCM8 isoform X1
KO
K10737
DNA helicase MCM8 [EC:
5.6.2.4
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvir03032
]
120665213
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120665213
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
120665213
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
120665213
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
120665213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MCM
WHD_MCM8
MCM_lid
MCM_OB
Mg_chelatase
AAA_5
AAA_3
Sigma54_activat
AAA_16
AAA
AAA_22
FtsK_SpoIIIE
AAA_lid_2
Motif
Other DBs
NCBI-GeneID:
120665213
NCBI-ProteinID:
XP_039800622
LinkDB
All DBs
Position
3N:complement(23474962..23484783)
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AA seq
786 aa
AA seq
DB search
MNADEMKVQAGGRTVNDAITKHLGWVWENYFTDETSRSVSDHRTQLAADLVECFSKEAKS
LLSPVQDFSSDIIPLPVDFLELQEICKFIKAELEESPKDALLCMGAAAHLVLCSDNNLKL
SHINKINVRLYNIGAAIALKKLKAAFIKKLVTVHGTVVKVSTVKPLVLQLKFQCMKCTEK
IKRAFCDGKFSPPMSCDTPGCKSRTFTPDRSSAELIDVQKIRIQELASADGHREGRVPRT
VECELTEDLVDCCIPGEIVTVTGIVKVQNNYMDVGGGKSKGRNQGLYYLYLEAISVRNLK
SHAVSDEEIRASGIPNFQTCSDRDLEFVVKYKERHGPDVFRQMLQSFCPSIYGHELVKAG
ITLALFGGVQKNSADQNKVPVRGDIHVVVVGDPGLGKSQLLQAAAAISPRGIYVCGNTTT
KAGLTVAVVKDSLTNDYAFEAGAIVLADRGVCCIDEFDKMSAEHQALLEAMEQQCVSVAK
AGLVASLSARTSVLAAANPVGGHYDRAKTVNENLKMSAALLSRFDLVFILLDKPDEMLDK
RVSDHIIALHSNDRDHSASNKRIKTVSPCNIDLGFGVGGNSFASRLRLHPEKDKNFAPLA
GQLLRKYISFAREHVHPRMSKAAGDILQEFYLTLRKGSTSADGTPITARQLESLVRLAEA
RARVDLRDEVTAEDAKDAVEIMRESLYDKYVDESGCVDFTRSGGMSQPKEAKRFLNELNK
QSELQQKSYFSRTEIYSLADKISLRVPDLDALVENLNSAGFLLQKGSGMYQLAAASYSQS
QPTRSR
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccgacgaaatgaaggtccaagccggcggccgcaccgtgaatgacgccatcacc
aagcaccttgggtgggtctgggaaaattacttcaccgacgagaccagccgctccgtgtcc
gaccacaggacccagctcgccgccgacctggttgaatgcttctccaaggaggcgaaaagc
ctcctctcacctgttcaagattttagcagtgacatcataccccttccggttgacttcctg
gagttgcaggaaatatgcaagtttattaaagctgaacttgaggaatctccaaaagatgcc
ttgctttgcatgggagctgcagcacatctggttttgtgctcggacaacaacctcaagttg
agccacatcaacaagatcaatgtcaggctttacaatataggggcggcaattgctttaaag
aaactaaaagcggcctttattaagaaacttgtcacagtgcacggtacagttgtaaaagtc
agcactgtgaagcctcttgttctgcaactgaagttccaatgcatgaaatgtactgaaaaa
atcaaacgtgcgttctgtgatgggaaattttcacctccaatgtcctgtgataccccagga
tgcaaaagcagaactttcaccccagatagatctagtgcagaattgatagatgtccagaaa
ataaggattcaggagcttgctagtgctgatggccacagagaaggccgagtgccacgaact
gtagagtgtgagcttacagaagatctcgttgattgttgcataccgggagagattgtaaca
gtaactggaattgtgaaagtacagaacaactatatggatgttggaggagggaagtccaaa
ggcaggaatcagggtttgtactacctgtacctggaagcaatttcagtgagaaacttgaag
tcccatgctgtttcagatgaagaaattcgggccagtggaatacccaattttcagacttgt
agtgatagggatcttgaatttgttgtcaaatacaaagaacgacatggccctgatgtattt
cggcagatgcttcagtccttttgtccctccatctatgggcatgaacttgtaaaagctggt
atcacacttgcacttttcggtggtgtgcaaaagaactcagcagatcaaaacaaggtccct
gttcgaggagacattcatgttgttgtcgttggtgatccgggactaggcaagagccaactc
ctccaagctgcagcagctatttccccacgaggaatatatgtatgtgggaatacaacaaca
aaggccggtctaactgttgctgtggttaaagattctttgacaaatgattatgcgtttgag
gctggcgccatagtccttgctgaccgtggagtttgctgcatagatgagttcgataaaatg
tcggcagaacatcaggctttactggaagccatggagcagcaatgtgtgtctgttgcaaag
gctggtcttgtagcaagtttatcagctcgtacctctgtgttggcagctgcaaatcctgtt
ggtggtcattatgaccgagcaaagacagtgaacgagaatctaaagatgagtgctgcgctc
ctctctcgttttgacttggttttcattctacttgacaagccagatgagatgctagataaa
agagtgtcagaccatataattgctctccatagtaatgacagagatcacagcgcatccaac
aagaggattaaaacagtgtcaccatgtaatattgatctgggatttggagttggtggaaat
tcatttgcttcaaggctgaggttgcacccagagaaagacaaaaatttcgctccattggct
ggacaacttctccgcaagtatatatcttttgcaagagaacatgttcacccaagaatgtca
aaagcagcaggtgatattttgcaagaattctatttgacgttgagaaaggggagcacttct
gctgatggtacacccatcacagccaggcagttagaaagccttgtcagattagctgaagct
cgtgctcgtgtggatctaagagatgaagtgaccgcagaagatgctaaggatgctgtagag
atcatgagagaatccttgtatgacaaatatgttgatgaaagcggttgtgtggactttact
cggagcggtgggatgagccagcccaaggaggcaaagcgatttctgaatgagttaaacaag
caatctgagttgcagcaaaaaagttacttttcgagaactgagatttacagcttagctgat
aagatcagcttgcgagttccagacttagatgccctcgtggaaaatctgaatagtgccggt
tttcttctgcaaaaaggatcaggaatgtatcagctggcagcggcgtcatattcacagagc
cagccaacaagatcaagatga
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