Panicum virgatum (switchgrass): 120665310
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Entry
120665310 CDS
T07260
Name
(RefSeq) coronatine-insensitive protein homolog 1b-like
KO
K13463
coronatine-insensitive protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
120665310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120665310
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
120665310
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
F-box
Motif
Other DBs
NCBI-GeneID:
120665310
NCBI-ProteinID:
XP_039800777
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All DBs
Position
3N:complement(24729767..24733245)
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AA seq
596 aa
AA seq
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MGGEAPEPRRLTRALSIGGGDGGWVPEEMLHLVMGFVEDPRGREAASLVCRRWHRIDALS
RKHVTVPFCYAVSPARLLARFPRLESLAVKGKPRAAMYGLIPDDWGAYARPWVTELAAPL
ECLKALQLRRMVVTDDDLAELVRARGHMLQELKLDKCTGFSTDGLRLVARSCRSLRTLFL
EECHIIDNGSEWIRDLASSCPALATLNFHMTELEVMPAELELLAKNCKSLISLKISDCDL
SDLIGFFHSATSLEEFAGGTFNEQGELAKYGNVKFPSRVCSLGLTFMGTNEMAIIFPFSA
ILKKLDLQYTFLTTEDHCQLIAKCPNLLVLAVRNVIGDKGLGVVADTCKKLQRLRIERGD
DEGGLQEEQGGVSQVGLTAIAVGCHELEYIAAYVSDITNGALESIGTFCKKLYDFRLVLL
DREERITELPLDNGVRALLRGCTKLRRFALYLRPGGLSDVGLGYIGQCSGNIQYMLLGNV
GETDDGLIRFALGCVNLRKLELRSCCFSERALALAILHMPALRYVWVQGYKASQTGRDVM
LMARPFWNIEFTPPVNARLMEDGEPCVDSQAQILAYYSLAGKRLDCPQSVVPLYPA
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgggcggggaggcgccggagccgcggcggctcacccgcgcgctgagcatcggcggcggc
gacggagggtgggtccccgaggagatgctgcacctggtgatggggttcgtggaggacccg
cgcggccgggaggccgcgtcgctggtctgccgccgctggcaccgcatcgacgcgctctcg
cggaagcacgtcacggtgcccttctgctacgccgtgtccccggcgcgcctgctggcgcgg
ttcccgcggctcgagtcgctcgcggtgaaggggaagccccgcgcggccatgtacgggctc
atcccggacgactggggcgcctacgcaaggccgtgggtcaccgagctagctgcgccgctc
gagtgcctcaaggcgctccagctccgccgtatggtggtcaccgacgacgacctcgccgag
ctcgtccgcgccagggggcacatgctgcaggagctgaagctcgacaagtgcaccggcttc
tccacggacggactccgcctcgtcgcccgctcctgcagatcgctgagaactttatttctg
gaagaatgccatattattgacaacggcagtgaatggatccgtgatcttgcatccagctgt
cctgctttggcaacattgaatttccacatgactgagcttgaagtgatgccagctgaacta
gagcttctggcaaagaactgcaagtcactgatttccctgaagattagtgactgtgatctt
tcagatttaataggtttcttccattctgcaacatcactggaagaatttgctggagggaca
ttcaatgagcaaggtgaacttgccaagtacgggaatgttaaatttccatcaagagtgtgc
tccttgggtcttactttcatgggtacaaatgaaatggctattatatttcccttttctgcg
atacttaagaagctggatttgcagtacactttcctcaccactgaagaccattgccagctc
attgcaaaatgcccgaacttgctagttcttgcggtgaggaatgtgattggagataaagga
ttgggggttgtcgcagatacctgcaagaagctccagaggctcagaattgagcgaggagat
gatgaaggaggtttgcaagaagagcagggaggggtctctcaagtaggcttgacggctata
gccgtaggttgccatgaactggaatacattgctgcctatgtctctgatataaccaatggg
gccctggaatctattgggactttctgcaagaaactttatgacttccgtcttgttctgcta
gatagagaggagaggataacagaattgccactggacaatggcgtccgagctctgctgagg
ggctgcaccaagcttcggagattcgctctgtacttgagaccaggggggctctcagatgtt
ggtcttggctacattggacagtgcagtgggaacatccaatacatgcttcttggaaacgtt
ggggaaaccgatgatggattgatccgcttcgcacttggatgtgtgaacctgcgaaagctt
gaactcaggagttgttgcttcagtgagcgagctctggccctcgcaatactacatatgcca
gcgctgagatacgtgtgggtgcagggctacaaagcctcccaaactggccgtgatgtcatg
ctcatggcgaggccattctggaacatagagttcacgcctcccgtgaatgcacggttgatg
gaagacggggagccttgtgtagatagtcaagctcagatacttgcatactactccctcgcc
gggaagaggttggactgcccgcaatccgtggtccctttgtatcctgcgtga
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