Panicum virgatum (switchgrass): 120665359
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Entry
120665359 CDS
T07260
Name
(RefSeq) polypyrimidine tract-binding protein homolog 3-like isoform X1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120665359
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
120665359
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RL
RRM_PARP14_3
P_C10
TGF_beta
DUF1797
Motif
Other DBs
NCBI-GeneID:
120665359
NCBI-ProteinID:
XP_039800843
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All DBs
Position
3N:25856236..25861009
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AA seq
446 aa
AA seq
DB search
MAEPSKVIHIRNVGHEIAESDLLQLLQPFGLVSKIVMLRAKNQALLQMEDIHASVSALQY
YSSVQPSVRGRNIYMQFSSHQELTTDQSSHGRNSDQESEPNRILLVTIHHMIYPITVEVL
HQVFKAYGFVEKIVTFQKSAGFQALIQYNSRQEAVEAFGSLHGRNIYDGCCQLDIQYSNL
SELQVHYNNDRSRDFTNPSLPTEQRPRTSQQQGYPDPAGLYAFQQPGASYAQMGRVAMIA
AAFGGTLPHGVTGTNERCTLIVSNLNTDKVDEDRLFNLFSLYGNIVRIKILRNKPDHALV
EMADGLQAELAVHYLKQGAILFGKKLEVNYSKYPNITPAPDAHDYLNSSLNRFNSNVVKN
YRHCCAPTKMIHISALPQEISEETILNHVSEHGSVVNTKLFEVNGKRQALVMFETEEEAT
EALVCKHASSLEGNTIRISFSQMQSI
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggcggagccgtccaaggtaatccacatccgcaacgttgggcacgagattgctgagtct
gatctactccagctgttgcagccgttcgggctggtctccaagattgtcatgctgcgtgcc
aagaaccaggctcttctgcagatggaagacatacatgcctctgtgagcgcgctgcaatat
tacagttcagttcaacctagtgtaaggggaaggaatatatacatgcaattctcatcccac
caagaacttaccacagaccagagctctcatggaaggaattctgatcaggagtctgaaccc
aaccgaatcctcttagttactatccaccacatgatctatcctataacggtggaggttcta
catcaagtattcaaagcttatggatttgtggagaagatagtcacatttcaaaagtcagct
ggttttcaagctcttattcagtataactcgcgccaagaagctgtggaagcatttggttct
ttgcatggaagaaacatatatgatggttgctgccagctagacattcaatattcaaacctc
agtgaactgcaagtccactacaacaatgaccggtctagggattttacaaatccatcattg
cctacagaacaacgtcctaggacctctcagcagcaaggttatcctgatccagctggtctc
tatgccttccaacaacctggagcttcgtacgcacagatgggaagagtagcaatgattgcg
gctgcgtttggtggaacgttacctcatggagtgactggtaccaatgaacggtgcacgctc
atagttagtaatttgaacactgataaagttgatgaggataggcttttcaatctgttttcg
ctgtacggaaacatagtacgaatcaagatattgcgtaataaaccagatcacgccctagtt
gagatggctgatggtttgcaggctgagctagctgtgcattatctaaagcagggcgcaatt
ctgtttgggaagaaactggaagttaactactcgaagtaccccaacatcacgcccgcccct
gacgcccatgactacttaaactcgagccttaaccggttcaacagcaacgtagtcaagaac
tacagacattgctgcgctccaacaaagatgatacacatttctgcccttccccaagagatc
tccgaggaaacaatcctcaaccacgtgtctgagcatggttctgtcgtcaacacaaagctg
ttcgaggtgaatggcaagaggcaggctctcgtcatgtttgagacggaagaggaggcgaca
gaggctctcgtgtgtaaacacgccagctcactggaggggaacacgatccggatctctttc
tcccagatgcagagtatataa
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