KEGG   Panicum virgatum (switchgrass): 120665398
Entry
120665398         CDS       T07260                                 
Name
(RefSeq) spliceosome-associated protein 49-like isoform X1
  KO
K12831  splicing factor 3B subunit 4
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120665398
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvir03041]
    120665398
Spliceosome [BR:pvir03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    120665398
 Complex B
    120665398
 Complex C
   U2 SnRNP specific factors
    120665398
SSDB
Motif
Pfam: RRM_1
Other DBs
NCBI-GeneID: 120665398
NCBI-ProteinID: XP_039800890
LinkDB
Position
3N:26431714..26435011
AA seq 190 aa
MARNPGCTVFIGNLDDRVPERVLYEILIQVGRVVDLHIPRDKETSRPKGYAFAEYESEEI
AQYAVKLFSGLVRLHNKTLRFAMSGQDKPSSNSNMPVTPRLNPLPTPKPPHLMRSSDTPA
SQQTVVNGRIAGYGISPSHSYDTHSQASSSGLPSRGLSNGTYENSRRVLDSVLNDASRQG
TREPVPYPSY
NT seq 573 nt   +upstreamnt  +downstreamnt
atggcgaggaacccgggctgcaccgtcttcataggtaacttggatgacagggttcctgag
agggttctgtatgagattcttattcaggtaggtcgagttgtagacctacacatacctcgt
gacaaggaaactagtcggccaaaaggttatgcttttgctgagtatgaatcagaggagatt
gcccagtatgctgttaagctattttctggccttgttcgacttcataataaaacacttaga
tttgcgatgtctgggcaagacaaaccctcatcaaatagcaatatgcctgtaactcctagg
ttaaaccctctaccaacaccaaagcctcctcatcttatgaggtctagtgatactcctgca
tcacagcaaacagtagtgaatggcaggattgcagggtatggtatctcaccaagtcattca
tatgacacacattctcaagcatcatcaagtgggttaccaagtagaggactaagcaatggt
acatatgagaatagtagacgtgtattggattctgttctgaatgatgctagccgtcaaggt
accagggaaccagttccatacccgtcctactag

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