Panicum virgatum (switchgrass): 120665406
Help
Entry
120665406 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 17-like isoform X1
KO
K14806
ATP-dependent RNA helicase DDX31/DBP7 [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120665406
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120665406
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120665406
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120665406
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Helicases
120665406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
UvrD-helicase
DUF7533
Motif
Other DBs
NCBI-GeneID:
120665406
NCBI-ProteinID:
XP_039800904
LinkDB
All DBs
Position
3N:complement(26537276..26542036)
Genome browser
AA seq
600 aa
AA seq
DB search
MPKKLGKPPPPAAAAQEEGREDLFASCSFADLGLHPTLCAHLQDKMGFQAPTRIQAQAIP
VAMSGQHMLVKAATGTGKTLAYLAPIVHLLQMREPRVDRTHGTFALVLVPTRELCLQVYG
IAQQLVHRFHWIVPGYVMGGENRAKEKARLRKGISILIATPGRLLDHLQHTASFVYSNLR
WIVFDEADSILELGFGKAVEDILEHLGSRNGALDQNKNKGEHIRRQNLLLSATLNEKVNR
LAKISLKNPVMIGLDDQKKPSGKSNTLGNSHTSLLSDDDEDGILEKQNDILEHAVDDFKL
PAQLVQRYVKVSCGSRLAVLLSILKSLFERQISQKVVIFLSTCDSVDFHHAVLSQLEWSS
GPQLDMDKKQKFLSCKVFRLHGNMEQDDRKKSFLGFGSEKSAILVSTDVAARGLDFPKVK
YIIQYDSPGEASEYVHRVGRTARIGEKGEALLFLQPIELDYLKDLESHGVSLTEYPFQKV
LDSFPVNGQKPHKRKIISLDMHPWIMSLQRSLEGFVAGEDATKKLARDAFCSWVRAYTAH
RGELKKIFMVKKLHLGHVARSFGLKEQPSLVGRSHQVQLKKRKEQKREQPAKRRKLPSKK
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagaagctcggcaagccgccgccgccggcggcggcggcacaggaggaggggaga
gaagacctgtttgcttcatgctccttcgccgacctcggactccaccctaccctctgcgcc
caccttcaagataagatgggtttccaagcaccgacgcgaattcaagctcaggcaattcct
gtcgccatgtctggacagcacatgctagtgaaggctgcaactggcactgggaaaactctt
gcgtaccttgcacctattgttcaccttctccagatgagagagcctcgtgtggatagaact
catggaacttttgcgttggttctcgtgccaacgcgagagttatgcttacaggtttatggg
attgcacagcagctggttcatcgttttcactggattgtccctgggtatgtcatgggtggt
gagaacagagcaaaagagaaagcaagactgcgaaaaggaatatcaattctcattgctaca
cctgggcgcctccttgaccatttgcagcatactgcgtcatttgtttattcaaatttgcgc
tggatagtttttgatgaagctgacagcattctcgaacttggttttgggaaagcagttgag
gatattctagagcacttgggttcaaggaatggagctcttgatcaaaataaaaacaaaggg
gagcatatccgaaggcaaaaccttctgttatctgcaactcttaatgagaaggtgaatcgg
ttggctaaaattagtttgaagaatccagtgatgattggccttgatgatcaaaagaagccc
tcagggaaatcgaacacgctagggaacagtcatacttctctattatctgatgatgatgag
gacgggatactggaaaagcaaaatgatatattggaacatgcagttgatgatttcaagctt
cctgcacaattagtccaaagatacgttaaagtttcatgtggctcaaggcttgcagttctt
ctgtcgattctcaaatctctatttgaaagacaaatttctcagaaggttgttattttctta
tcaacttgtgactctgttgatttccatcacgcggtactcagccagcttgaatggagctct
ggcccacaacttgatatggataagaagcaaaaatttcttagttgtaaagtgttccgtttg
catggtaatatggagcaggatgatcgcaaaaagtcatttttgggttttggttctgagaaa
tctgcaattcttgtatctaccgatgttgctgctagaggcttggactttccaaaagtcaag
tacatcatacaatatgattccccaggggaagcttctgaatacgttcacagggttggaaga
actgcaaggattggtgaaaagggggaggctctcttgtttttgcaacctattgaacttgac
tatttgaaagatctggagtcacatggtgtatccctgacagaatacccctttcaaaaggtt
ttggatagctttcctgtaaatggacagaaacctcacaaaaggaagataatatctttagac
atgcacccttggataatgtctctgcagagatcactggagggttttgtcgctggtgaggat
gcaacaaagaagcttgccagggacgctttctgttcctgggttcgtgcctacactgcccac
cgaggcgaactgaagaagattttcatggtgaagaagctccacttggggcacgtagcgagg
agcttcgggctgaaggagcagccgtcgttggtgggaaggtcgcaccaggtgcagctcaag
aagaggaaggagcagaagcgtgaacagcctgccaagaggagaaagctcccctccaagaag
tga
DBGET
integrated database retrieval system
