Panicum virgatum (switchgrass): 120665410
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Entry
120665410 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52B-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120665410
03041 Spliceosome [BR:
pvir03041
]
120665410
03036 Chromosome and associated proteins [BR:
pvir03036
]
120665410
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120665410
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120665410
mRNA cycle factors
Common to processing body (P body) and stress granule
120665410
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
120665410
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120665410
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
GRP
Cas3-like_C_2
IKKbetaNEMObind
Motif
Other DBs
NCBI-GeneID:
120665410
NCBI-ProteinID:
XP_039800911
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All DBs
Position
2K:complement(9186019..9192591)
Genome browser
AA seq
645 aa
AA seq
DB search
MRSSWADSVANAEESAPATGAANGSVANHGNPRPTRSSYVPPHLRGRPAGAGVDAQAGSA
APAQGGPLPSAAAQPSGPAAAVGGPRWAGIVNGGGSGSVGAPRQGYGGGGRGGGGGGGAW
NSRPGGWDRRDREPDPFAKAEAEEVDFEGAENTGINFDAYEDIPVETSGHDVPAPVNTFA
EIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIL
KSRPPQRQRSSRTACPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGGAPITNQLR
ELERGVEILVATPGRLMDLLERARVSLQNIMYLALDEADRMLDMGFEPQIRKIVEQMDMP
PRGQRQTMLFSATFPKEIQSMAADFLADYIFLAVGRVGSSTDLIVQRVEFVLDADKRSYL
MDLLHAQKANGTHGKQALTLVFVETKRGADALEDWLFRNGFPATSIHGDRSQQEREHALR
SFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFF
NESNTSLARQLSELMQEANQEVPQWLERYAARSTYGGGGGRNRRSGGGARFGGRDFRRDR
GSGGYGGGGGAYGGGGGGGYGGSSGYGGGYGGGGGGYGGGQSAWD
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgcgatcttcatgggctgattcagttgcgaacgccgaggaatcggcgcccgcgactggt
gctgctaacggatccgttgctaatcacggcaacccgcgccccacgcgcagctcctacgtg
cctcctcacctccgtggccgtccagctggtgctggtgttgacgcccaagcaggctcagca
gcgccggcgcaaggtggcccattgccctcagctgccgcacagccatctggtccggctgct
gctgttggtggccctcgctgggctggcattgttaacggtggtggaagtggcagtgtgggt
gctcctcgtcagggttatggcggtgggggccgtggcggtgggggcggtggcggtgcctgg
aactcccgtcctggcggttgggaccgcagagaccgtgagccggatccctttgctaaagct
gaggcagaagaagttgacttcgagggtgctgagaacactggcatcaattttgatgcctat
gaagacatccctgttgagaccagcggccacgatgtacccgcaccagtcaacacattcgca
gagattgatttgggtgatgcgctgaatgagaatatccggaggtgcaagtatgtgaaacca
acaccagtgcagcgttatgctatcccaatctccatcgctgggcgggatcttatggcctgc
gcacagacggggtctggaaaaaccgcagccttctgtttcccaatcatcagtggcatcttg
aagtctaggccaccccagaggcagcgtagttcaaggactgcatgtcctctggctctgatc
ttatctcccactcgtgagctttcagtccaaatccatgaagaagcaaggaaatttgcatat
cagactggtgtcagagttgtggttgcatatggaggtgcaccgataacaaatcagctgagg
gagttagaaagaggtgttgaaatcctggtggcaactcctggacgcttaatggatctgttg
gagagggctagagtctcactgcaaaacattatgtatttagctctcgatgaagctgatcga
atgcttgatatgggttttgagccacagatacgtaaaattgttgagcagatggacatgcct
ccacgtggccagaggcagacaatgttgtttagtgctacattcccgaaagagatacagagt
atggctgcagattttcttgctgattacatctttcttgctgttgggagggttggttcaagt
accgatttgattgttcagagggtggagtttgtcctagatgcagacaaacgtagctacctt
atggaccttcttcatgcgcaaaaggctaatggtacacatgggaagcaagctcttactttg
gtctttgtggagacaaagaggggggctgatgctttggaggactggctctttagaaatggt
ttcccggcaactagcattcatggagacaggtcacaacaggaaagggagcatgctctcaga
tcattcaagagtggagcaactcccatccttgtggcaactgatgttgctgctcgtggtctt
gacataccacatgtcgctcatgttatcaattttgacctcccaaatgatatagatgactat
gtccatcgtattggaaggactgggcgtgccggcaaatctggcctggcgactgcatttttc
aatgagagcaacacgtcgctggcaaggcagttgagtgagctcatgcaagaggccaaccag
gaggttccacagtggcttgagcggtacgctgcccgttcaacctacggaggtggtggcggt
agaaaccgcagatcaggtggcggtgccaggtttggtggccgtgacttcaggcgagacagg
ggcagtggtgggtatggcggcggcggtggtgcttatggtggcggcggtggtggcggatat
ggggggtcatcgggatatggtggtgggtatggaggcggcggcggcggctacggtggtggt
cagagcgcttgggactga
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