Panicum virgatum (switchgrass): 120665462
Help
Entry
120665462 CDS
T07260
Name
(RefSeq) beta-hexosaminidase 3-like
KO
K12373
hexosaminidase [EC:
3.2.1.52
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00511
Other glycan degradation
pvir00513
Various types of N-glycan biosynthesis
pvir00520
Amino sugar and nucleotide sugar metabolism
pvir00531
Glycosaminoglycan degradation
pvir00600
Sphingolipid metabolism
pvir00603
Glycosphingolipid biosynthesis - globo and isoglobo series
pvir00604
Glycosphingolipid biosynthesis - ganglio series
pvir01100
Metabolic pathways
pvir04142
Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09103 Lipid metabolism
00600 Sphingolipid metabolism
120665462
09107 Glycan biosynthesis and metabolism
00520 Amino sugar and nucleotide sugar metabolism
120665462
00513 Various types of N-glycan biosynthesis
120665462
00531 Glycosaminoglycan degradation
120665462
00603 Glycosphingolipid biosynthesis - globo and isoglobo series
120665462
00604 Glycosphingolipid biosynthesis - ganglio series
120665462
00511 Other glycan degradation
120665462
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
120665462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
pvir03110
]
120665462
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.52 beta-N-acetylhexosaminidase
120665462
Chaperones and folding catalysts [BR:
pvir03110
]
Intramolecular chaperones
Others
120665462
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_hydro_20
Glycohydro_20b2
Glyco_hydro_20b
Motif
Other DBs
NCBI-GeneID:
120665462
NCBI-ProteinID:
XP_039800968
LinkDB
All DBs
Position
3N:27333411..27338897
Genome browser
AA seq
532 aa
AA seq
DB search
MAPAARLLLALLAAAAAAVGPCAGAGAGAGRVDLWPMPASVARGAQTLLVSRDLKLSTPG
SNYSDGRGILREAFQRMLAVVELDHVVNGSYGGRGSPVLAGVRVVVRSPNDELNFGVDES
YKLSVPATGNPLYAQIEAQTVFGALHALETFSQLCKFDFNARLIELHSAPWTIMDVPRFH
YRGLLIDTSRHYLPVPVIKSVIDSMTFSKLNVLHWHIVDEQSFPLQIPSYPKLWNGAYSY
SERYTFDDAIDIVQYAEKRGVNVLAEIDVPGHALSWGVGYPSLWPSATCKEPLDVSNDFT
FQVINGILSDFGKIFKFKFVHLGGDEVNTSCWTTTPRIKSWLIQHGMNESDAYRYFVLRA
QKIAISHGYDIINWEETFNNFGDKLDRKTVVHNWLGSGVAQKVVTAGLRCIVSNQDKWYL
DHLDATWEGFYMNEPLTNIYNPEQQRLVLGGEVCMWGEHIDASDIQQTIWPRAAAAAERL
WTPIEKLAKDPGSVAARLARFRCLLNQRGVAAAPLAGYGRSAPSEPGSCLRQ
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggcgccggctgcgaggctgctgctggcgctgctcgcggcggcggcggcggcggtcggg
ccgtgcgccggcgccggggccggggccggccgcgtcgacctgtggccaatgccggcgtcg
gtggcccgcggggcgcagacgctcctcgtcagccgggacctcaagctgtccacgcccggg
agcaactactccgacgggaggggcatcctcagggaggcgttccagcggatgctcgccgtc
gtggagctcgaccacgtcgtcaacgggagctacggcggccggggctcgcccgtgctcgcc
ggcgtccgcgtcgtcgtccgctcgcccaacgacgagctcaacttcggggtggacgaatcg
tacaagctgtccgtgcctgcgaccgggaacccgctgtacgcgcagatcgaggctcaaaca
gttttcggagcacttcacgccttggagacgtttagccaattatgcaaatttgatttcaat
gcaaggctgattgaacttcattcagctccttggactatcatggacgtgccgaggtttcat
taccgggggcttcttattgatacttcaaggcactatcttcctgtcccagtgataaaaagt
gtaattgattcaatgaccttcagtaaactgaacgttcttcattggcatatcgtggatgag
caatcatttccccttcaaataccttcatacccaaaattatggaatggtgcatactcttat
tcagagagatatacatttgatgatgctatcgacattgtacagtatgctgaaaaacgaggt
gtgaatgtcttggctgagattgatgtacctggccatgctctctcatggggtgtcggatat
ccatcattgtggccatcagctacatgtaaagaaccgcttgatgtcagcaatgacttcaca
ttccaagtgattaacggaattctatcagatttcggcaagatttttaagttcaagtttgtc
catttaggaggagatgaagtaaacacaagttgctggactaccacaccacgcattaaatca
tggttgattcagcatggcatgaatgaatctgatgcctacagatattttgtactgagagct
caaaagatagccatatcacatggttatgacattattaactgggaagagacatttaacaac
tttggagacaagttggatcgtaaaaccgtggtgcataactggcttggaagtggagttgca
cagaaagtggttactgctggtctgagatgcattgtaagcaaccaggataagtggtaccta
gatcacctggatgctacatgggaaggattttacatgaatgaaccattgacaaatatctac
aacccggaacagcagagattggttcttggtggtgaggtatgcatgtggggtgaacacata
gatgcatcagacattcagcaaaccatttggccacgtgctgcagcagctgcagagcggctg
tggactcccattgagaagcttgcaaaggacccgggatcagtcgctgcaagattggcacgc
ttcaggtgcttgctcaatcaaagaggggttgctgctgcaccgctagctggttatggtcgt
tcagcgccgtcggaaccaggctcctgtctaaggcagtag
DBGET
integrated database retrieval system