Panicum virgatum (switchgrass): 120665463
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Entry
120665463 CDS
T07260
Name
(RefSeq) splicing factor 3B subunit 3-like isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120665463
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120665463
03041 Spliceosome [BR:
pvir03041
]
120665463
03036 Chromosome and associated proteins [BR:
pvir03036
]
120665463
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
120665463
Spliceosome [BR:
pvir03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120665463
Complex B
120665463
Complex C
U2 SnRNP specific factors
120665463
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
120665463
TFTC complex
120665463
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
120665463
NCBI-ProteinID:
XP_039800972
LinkDB
All DBs
Position
2K:complement(9277836..9288151)
Genome browser
AA seq
1361 aa
AA seq
DB search
MEASTADAGGASASSAAASSSSGPSTSASAAADAGVTHYLAKRVLRGSAVLHVAEGCFRS
PDSADVVLAKETSLELVAVGDDGVLQSICEQDMFGIVKDIGVLQWHSRHIGLIPQIEHKD
LLVVLSDSGKLSLLYFCPEMHRFFAIANIELSKPGNLRHQLGRVLAIDRESSFVAVSAYE
DKFALIHVSVCQSPHGSGRGVISDKKYFYPPENVEDARTVSGASRTIIRGTIWTMRFIST
SQGEEYYPVLAMIINRKGSDVNDLLLFGYESSTGVISHISSYSEIGPLALDISEIPEMLG
FALLFRVGDALLLDFRNPRNVCCIRRISLTTSLIGEPVTVEDSCPGLDVDDDVAACALLE
LRDSANNILKDDGYMDIDGVDSRGSVKSRIVCSWSWEPPDPIRQGWARLLFCLDDGEFHI
LDFTSDVEGVKLYTFEYVDRSLPCKPLLWMKNRMIIGFVEMGDGMIFKLGHRRLFLKSTI
QNVAPILDLAIADYHGEKQDQMFACCGMCPEGSLRVLRNGVNVEKLLRTEAIYQGVTGLW
TLRMKTNDAYHSFLVLSFVEETRILSVGLSFNDISDAVGFQPDVCTLACGLVADGLLVQI
HSKGVKLCLPTVYAHPEGAPLTSPICTNWYPDVTISVGAVGHNIVVVATSNPCCLYILGV
RSSSSYQHELYETHHVQLQYEVSCISIPQEELRPDNVTLSGGERDDFSNNPSVDVNVRKF
AVVGTHKPSVEIISVEPGEALRLLTIGTISVNNALGAPVSGCIPENVRFVAAERFYILAG
LRNGMLLRFESEATEHYFPGSFYKDSSIPSVTAFLQLISIRRIGITPVFLVPIHDSANAD
IIVLSDRPWLLHAARHSLAYSSISFLPASHVTPVSSVDCPNGLLFVAESCLHLVEMVHGK
RLNAQKFSIGGTPRKVLYHNESRTLLVLRTGLSGASCSSDIVQVDPQNGVLLSRYKCEPG
ETAKCMQITKIGSDQVLLVGTSRSAGRPMMSNGEAESSTKGRLIVLSLEAVESPRESSSF
IPTSSFNPSSHSGSPFHDIIGYTTEEFSSNSLCSSPDEFCCNQIQSEQMAGHLRSLSHAT
LSGAVLAVYPYLDRYVLAAAGNTIYLFGFANENPHRMKKCAVGRTRFTITCLKTFASRIA
VGDCRDGVLFYSYNESNRKLELIYSDPAQRLVGDIALLNCETAVVSDRRGSISVLSSTRL
EISESPQKNLAVNCSFYMGETAMSIQKAAFRYRLPIDDDTDPVLESAYDCIVASTLLGSL
FVMIPLTSEEHQLLQDVQERLSVHPLTAPVLGNDHAEFRQRGIPPGVPPILDGDMLVEFL
ELTGEQQQAILAHALPGKGPRRPVSVFEVLRTLERVHYALN
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atggaggcctccaccgccgacgccggcggcgcctccgcctcgtcggctgcggcgtcctcc
tcctcgggcccttccacatccgcgtccgcagccgccgacgctggcgtcacccactacctc
gccaagcgggtgctccggggcagcgccgtgctccacgtcgccgaggggtgcttccgctcg
cccgactccgccgacgtcgtcctcgccaaggaaacttcactagagctggttgctgtcggt
gatgatggtgttttgcagtcaatctgtgaacaagacatgtttgggattgtaaaggatatc
ggtgtcttgcagtggcactctagacacattggtttaattccacagatagaacacaaggac
cttctggttgtgctttctgattccggaaagctttcccttctttatttttgtcctgagatg
cataggttcttcgcaattgccaatattgagttatccaaaccaggaaatctgaggcatcaa
ctgggaagagttttagctatagatcgagaatctagttttgttgctgtcagtgcgtatgag
gataagtttgctcttatacatgtttcagtgtgccagagtcctcatggttctggcagaggt
gtcatttctgacaagaaatatttttatccaccagaaaatgtggaggatgcaagaactgta
agtggtgcatctaggaccatcatccgaggtacaatttggactatgcgcttcatatcgaca
tcccaaggtgaagaatactatccagttctggcgatgataatcaacaggaagggctctgat
gtgaatgacttgttattatttggatatgaatccagcaccggtgttatcagccacatctct
agttattcagaaatcggaccattagcacttgacatatcagaaattcctgaaatgcttggc
tttgcacttctgtttcgtgttggtgatgctttactgttggattttagaaacccaaggaat
gtttgttgtatccgaagaattagcttgacgactagcctgattggagaaccagtcactgtt
gaagattcctgtccaggattagacgttgatgacgatgtggctgcttgtgctttgctagaa
ttgagagattctgcaaataatatactgaaggatgatggttatatggacattgatggtgtt
gatagcagaggtagcgtgaaatcaaggatcgtttgctcatggagctgggagccacctgac
ccaatcagacaaggatgggcaaggcttctattttgcttagatgatggagaatttcatatt
ttggattttacttctgatgttgaaggagtcaagttgtacacatttgagtatgttgatagg
agtttgccctgcaaacctcttttgtggatgaaaaatagaatgataataggatttgtggag
atgggggatggtatgatatttaaacttggccatcgtagattgtttcttaaaagcacaatt
cagaatgtagcaccgatattggatctagcaattgctgattaccatggtgagaaacaggat
cagatgtttgcatgttgtggtatgtgccctgagggctccttgcgtgttttacggaacggt
gtcaatgtggagaaacttctgaggactgaggctatttatcagggtgttactggattgtgg
actttgagaatgaagacaaatgatgcttaccactcttttcttgtgttatcatttgtggag
gaaaccagaatactctcagtaggactaagttttaacgacatcagtgatgccgtgggattc
cagcctgatgtttgcactttggcgtgtggtttggtggctgatggtttgctcgtgcaaatt
cacagtaaaggtgtaaagctctgtttgcctacagtatatgctcaccctgagggtgcccct
ttaacttctccaatttgcaccaactggtaccctgacgtcactatcagtgttggtgctgta
ggacataatattgttgttgtcgctacgtcaaatccctgttgcctatatatccttggagtc
agatcatcttcgtcttaccagcacgaattgtatgagacacatcatgttcaattacaatat
gaagtatcgtgcatatccatcccgcaagaggaattgagacctgataatgtaacattgagt
ggtggagagcgtgatgattttagtaacaatccctcagttgatgttaatgtccgcaagttt
gctgttgttggaactcataaaccttctgtggaaatcatctctgtggaacctggagaagca
ttaaggttattgactattgggactatatcagtgaacaatgcacttggtgctcctgttagt
ggttgtatacctgaaaatgtgaggtttgttgcggctgagaggttttacatccttgcaggc
ttgagaaatggaatgctactaagatttgaatcagaagcaaccgagcattattttcctggt
tccttctacaaggactcttctatcccttctgttactgcattccttcagttgatttcaata
cggcggattggaattactcctgtattcttagtaccaatacatgattcagctaatgctgat
atcattgttctcagtgataggccttggctattacatgcggccagacatagtctggcatat
tcatccatttcgtttcttcctgcttcgcatgtgacaccagtgtcatctgttgattgcccc
aatggtctactgtttgttgctgagagctgtttgcatttggttgaaatggttcatgggaag
cgattgaatgcacaaaagttttcaattgggggaactccaaggaaagtgctataccataat
gaaagcagaacactgttggtactaagaactgggctaagtggtgcatcatgttcttcggat
attgtccaagtagatccacaaaatggtgtattgctttccagatataaatgtgaacctggt
gaaacagcaaagtgcatgcaaattacaaaaataggaagtgaccaagttttacttgttgga
actagtagatctgctggacggccaatgatgtcaaatggtgaagcagaaagcagtaccaag
ggacgcctgattgttttaagcttggaggctgttgaaagtccacgtgagagcagttcattt
attccaacctctagttttaatccctcttcgcattctggctctcctttccacgatatcatt
ggatatacaactgaagaattttctagtaacagtctgtgcagcagtcctgatgagttttgc
tgcaaccagattcaatctgaacaaatggcaggacatttgagatcattgtctcatgctaca
ttgagtggtgcagttcttgctgtgtacccatatctagatcgttatgtgttggcagctgct
ggtaatacgatttatttatttggtttcgcaaatgaaaatccacataggatgaaaaaatgt
gctgttggtagaacacggtttacaataacttgtttgaagacatttgcatcacggattgca
gttggtgattgtcgtgatggtgttctattctattcttataatgagagtaataggaaactg
gaattgatctattctgatcctgctcaaagattggtgggtgacattgcacttctaaattgt
gagacagctgtggtatcagatcggcgtgggagcatatctgtattatcttccacaagattg
gaaatttcagaaagtccacagaagaacttagctgtaaattgttcattttatatgggtgaa
acagctatgagcattcagaaggctgcattcagatatcggcttccaattgatgatgatact
gacccggtgcttgagtctgcttatgattgtattgtggcaagtaccttgctgggaagtctc
tttgtcatgattccacttacaagtgaggaacatcagttgttgcaagatgtccaggaaaga
ctttcagtacacccattgactgcaccagtcttgggaaatgatcatgcagaatttcgtcag
cgtggtatcccgccaggagtacctcccattcttgatggcgatatgctcgtggaatttttg
gagctcactggtgaacaacagcaagccatccttgctcatgctttgccagggaaaggacca
cgcaggcctgtctcggtcttcgaggtcttgcgaacattggagcgtgttcactatgcactc
aactga
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integrated database retrieval system
