Panicum virgatum (switchgrass): 120665497
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Entry
120665497 CDS
T07260
Name
(RefSeq) 1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic isoform X1
KO
K01662
1-deoxy-D-xylulose-5-phosphate synthase [EC:
2.2.1.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00730
Thiamine metabolism
pvir00900
Terpenoid backbone biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00096
C5 isoprenoid biosynthesis, non-mevalonate pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
120665497
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
120665497
Enzymes [BR:
pvir01000
]
2. Transferases
2.2 Transferring aldehyde or ketonic groups
2.2.1 Transketolases and transaldolases
2.2.1.7 1-deoxy-D-xylulose-5-phosphate synthase
120665497
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Gene cluster
GFIT
Motif
Pfam:
DXP_synthase_N
Transket_pyr
Transketolase_C
E1_dh
TPP_enzyme_C
Transketolase_N
Transketolase_C_1
Motif
Other DBs
NCBI-GeneID:
120665497
NCBI-ProteinID:
XP_039801010
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Position
3N:27973922..27978986
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AA seq
755 aa
AA seq
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MALSTFSVPRGFLGVPAQDSHFAPAAELHAHKQLQARPAVKGQGRRRSACVSASLSERER
EAEYYSQRPPTPLLDTINYPVHMKNLSVKELRQLADELRSDVIFHVSKTGGHLGSSLGVV
ELTVALHYVFNAPQDRILWDVGHQSYPHKILTGRRDKMPTMRQTGGLAGFTKRAESEYDC
FGTGHSSTTISAALGMAVGRDLKGGKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMVVI
LNDNKQVSLPTATLDGPVPPVGALSSALSKLQSSRPLRELREVAKGVTKQIGGSVHELAA
KVDEYARGMISGPGSTLFEELGLYYIGPVDGHNIDDLISILNDVKSTNTTGPVLVHVVTE
KGRGYPYAERAADKYHGVAKFDPATGKQFKSPAKTLSYTNYFAEALIAEAEQDSRIVAIH
AAMGGGTGLNYFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRGYDQV
PFPFLLAAASFLPSSVCSLDRSLMPLAAGRRMQVVHDVDLQKLPVRFAMDRAGLVGADGP
THCGAFDVTYMACLPNMVVMAPSDEAELCHMVATAAAIDDRPSCFRYPRGNGIGVPLPPN
YKGTPLEVGKGRILLEGDRVALLGYGSAVQYCLAAAALVERHGLKVTVADARFCKPLDHA
LIRSLAKSHEVLITVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGPPAD
QLAEAGLTPSHIAATVFNVLGQNREALAIMAVPNA
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtcgacgttctctgttccgcggggattcctcggcgtgccggctcaggactcc
catttcgctccggcggccgagctccatgcgcacaagcaacttcaggccaggcctgctgtc
aagggccagggtcggcggaggtcggcgtgcgtgtcggcgtcgctgtcggagcgcgagcgc
gaggcggagtactactcgcagcggccgccgacgccgctgctggacaccatcaactacccg
gtccacatgaagaacctgtcggtgaaggagctccggcagctcgccgacgagctccgctcc
gacgtcatcttccacgtctccaagaccggcggccacctcgggtccagcctcggcgttgtg
gagctcaccgtcgcgctgcactacgtcttcaacgcgccgcaggaccgcatcctctgggac
gtcggccaccagtcgtacccgcacaagatcctgacggggcggcgcgacaagatgccgacg
atgcggcagaccggcgggctggcggggttcacgaagcgcgccgagagcgagtacgactgc
ttcggcacggggcacagctccaccaccatctcggcggcgctgggcatggcggtggggcgg
gacctcaagggcggcaagaacaacgtggtggcggtgatcggcgacggcgccatgacggcg
gggcaggcgtacgaggccatgaacaacgccggctacctcgactccgacatggtcgtcatc
ctcaacgacaacaagcaggtctccctgccgacggcgacgctcgacgggcccgtgccgccc
gtcggcgcgctcagcagcgcgctcagcaagctgcagtccagccgcccgctcagggagctc
cgggaggtggccaagggcgtgacgaagcagatcggcgggtcggtgcacgagctggcggcg
aaggtggacgagtacgcccgcggcatgatcagcggccccggctccacgctcttcgaggag
ctcggcctctactacatcggccccgtcgacggccacaacatcgacgacctcatctccatc
ctcaacgacgtcaagagcaccaacaccaccggccccgtcctcgtccacgtcgtcaccgag
aagggccgcggctacccctacgccgagcgcgccgccgacaagtaccacggcgtcgccaag
ttcgacccggcgacggggaagcagttcaagtcgccggccaagacgctgtcctacaccaac
tacttcgccgaggcgctcatcgccgaggccgagcaggacagcaggatcgtcgccatccac
gccgccatgggcggcggcacggggctcaactacttcctccgccgcttccccacccgctgc
ttcgacgtcgggatcgccgagcagcacgccgtcacgttcgcggccggcctcgcctgcgag
gggctcaagcccttctgcgccatctactcgtccttcctgcagcgcggctacgaccaggtc
cccttcccctttctcttggcagcagcatcgtttcttccttcttctgtgtgctcgctcgat
cggtcactgatgccgctagctgccggccggcgcatgcaggtggtgcacgacgtcgacctc
cagaagctcccggtgaggttcgccatggacagggccgggctggtcggcgcggacgggccg
acccactgcggcgcgttcgacgtcacgtacatggcgtgcctgcccaacatggtcgtcatg
gccccgtccgacgaggccgagctctgccacatggtcgccaccgccgcggccatcgacgac
cgcccgtcctgcttccggtacccgagaggcaacggcatcggcgtcccgttgccgcccaac
tacaaaggcacccccctcgaggtcggtaagggcaggatcctgctggagggcgaccgggtg
gcgctgctggggtacgggtcggcggtgcagtactgcctggcggcggcggccctggtggag
cgccatggcctcaaggtcaccgtcgccgacgccaggttctgcaagccgctggaccacgcc
ctgatcaggagcctcgccaagtcccacgaggtgctcatcaccgtggaggaaggctccatc
ggagggttcggctcgcacgtcgcccagttcatggccctggacggccttctggacggcaaa
ctcaagtggcggcctctggtgcttccggacaggtacatcgaccacgggccgccggccgat
cagctggccgaggccgggctgacgccgtcgcacatcgccgcgacggtgttcaacgtcctg
gggcagaacagggaggccctggccatcatggcagtgccgaacgcgtag
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