Panicum virgatum (switchgrass): 120665602
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Entry
120665602 CDS
T07260
Name
(RefSeq) SNF2 domain-containing protein CLASSY 2-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120665602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120665602
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
120665602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
120665602
NCBI-ProteinID:
XP_039801129
LinkDB
All DBs
Position
3N:complement(29610457..29618262)
Genome browser
AA seq
1549 aa
AA seq
DB search
MDRAGRRARTRHGESPAAARAGAPSSSRARRRGEGPVVVIDLGDDDDGGRGGGRGREAAG
GAAGRRGGSTAAASPPRSATPPPMMVPAGAVAMRTRSRRRAMEAAVAAPEEPRARRRRKG
ASSDVAEASGGRGSKAAGASRSTPRDKRRGRDRSRRASEPARTARARKRRGKESEAETEV
EAPARGEWVEVSRGNESDDDGGRRDDASDGGNGEARIGSANAKKGNRGRRRATGGHEILE
PCVAREVTALDLNHRTDEVVSGDAEEVEGAADEGGGRGDGCIVHENTRDSGTREQAPIVN
VVAEEMATFEGDYDDEMLEEQLVGDVIRAYSNGGDLDADGVDWEAEDDTEFDDEEQLVGD
VIRAYGNGGDLDADGVDWDAEDEMEFDAEEQLVGDVIRAYGNGGDLNADGVDWEAEDEME
FDDDGDFMDDADEGGMTEPMQDLVNRNVVLSGGRCQDAEEAEAEAEEKQAGIKDEVEPKG
EAAPGSSQQGLHVEILESDEEEVKVLENVSSAPSRKASVQAKLPTIPSCVAWRTRSSWGM
IQDRLSYNTYFEALSDEPKEEDDTEVELDEEDNNDDDSSETFDEDEEKDEEEKEEEEEEA
ERRKLKNRIYTSDDDMIDSTVPTSRYEDTTVPTSRYEDTTVPTSRYEDTTVHTSRYDIKW
EEDEDASVDISQPISFKKATRWNPVAVGNDTFTEQQKQSRFTWELERRKKVKLGMKTHPL
YGRDLDSDSSSSGPDQIKRYEFKDGDHKVGRKKKHSSSKSGKKSGHATILKRQSLLKLLI
DKMSGDRNEEPFPFDQNPQLQFTFKEMHPLVFSFGDEDLVPADKPEQDGALDMLWADFDF
ALESENIGTYYDDEGQEEGNQLDFALAPVTPCSRGKHEFIIDDQIGIRCKYCSLVNLEIK
FMFPSLVSGFAEKSAWPNAKGVKNALMFHDLYEEADSGTEHSQDFHLYGTVWDLIPGVIS
TMYEHQHEAFEFMWTNLVGDIRLDELKHGARPDIVGGCVICHAPGTGKTRLAIVFIQTYM
KVFPDCRPVIIAPRGMLFAWDEEFKKWNIDAPFHIMNTADYTGKEDRDICKLIKKKHRTE
KLTRLVKLLSWNKGHGILGISYGLYTKLTSEKPGCTEENRVRSILLENPGLLVLDEGHTP
RNDRSVMWKTLGNVKTEKRIILSGTPFQNNFLELYNILCLVRPRFGEMFLTKARVGRRYC
VSKKQKDKFSDKYEKGVWASLTSNVTDDNAEKVRSILKPFVHIHNGNILRTLPGLRESVI
ILKPLPLQKSIIRKVENIGSGNNFEHEYVISLASTHPSLVTAINMSEEEASLIDKPMLQR
LRSNPYEGVKTRFVIEVVRLCEALKEKVLIFSQFIQPLELIKEQLRKFFKWREGKEILQM
DGKILPRYRQASIEAFNNPNNDSRVLLASTKACCEGISLTGASRVVLLDVVWNPAVGRQA
ISRAFRIGQKKFVYTYNLITYGTGEGDKYDRQAEKDHLSKLVFSTEDEFNNVRNMLSKAE
MEHCSKLISEDKVLEEMTSHDQLKGMFLKIHYPPTESNLIYTYNQIAPA
NT seq
4650 nt
NT seq
+upstream
nt +downstream
nt
atggatcgagccgggcggcgcgcccgcacccgccacggcgagtccccggcggcggcgcga
gcgggagcgccgtcctcctcccgcgcgcgccggcgcggcgaggggccggtcgtggtcatc
gacctcggcgacgacgacgacggcggccgcggcggtggcaggggcagggaggcggcgggt
ggcgccgcgggcaggcgcgggggctcgacggcggctgcctcgcctccgcgttcggctacg
ccgccgccgatgatggtgccggcgggggcggtggcgatgcggacgcgatcgcggaggcgg
gcgatggaggctgcggtggcggcgccggaggagcccagggcgaggaggaggaggaaggga
gcaagctcggatgtcgcggaggcgtccggtggccggggcagcaaggctgccggggcctcg
aggtcgacgccgagggataagcggcgcgggcgcgaccgctcgcggcgagcgtcggagcca
gcgagaacggcccgcgcgcggaagcgcaggggcaaggagtcggaggcggaaacagaggtg
gaggcgccagcccgtggagaatgggtcgaggtgtcacgtggcaatgaaagtgatgacgac
ggcgggcgacgcgatgacgcttctgatggcgggaatggggaggctcgcattggaagcgcc
aatgctaaaaagggcaacaggggtcgtcgcagagccaccggtgggcacgagattttggag
ccttgcgtagcccgggaggtcactgctttggatttgaatcatcgcacggacgaggtggtc
tcgggagatgcagaggaagtggaaggtgctgctgatgagggaggtgggcgaggtgatggc
tgtattgtccacgagaacacgagagattctgggaccagagagcaggcaccgattgtgaat
gtggtggctgaggagatggcaacctttgaaggtgactatgatgacgagatgttggaggag
cagcttgttggagatgtaatccgtgcttacagcaacggtggagacttggatgcagatgga
gtggactgggaggcagaggatgatacggagtttgatgatgaggagcagcttgttggagat
gtaatccgtgcttatggcaatggtggagacttggatgcagatggagtggattgggacgca
gaggatgagatggagtttgatgctgaggagcagcttgttggagatgttatccgtgcttac
ggcaatggtggagacttgaatgcagatggagtggattgggaggcagaggatgagatggag
ttcgatgatgatggtgattttatggatgatgctgatgaaggtggcatgacagaaccaatg
caagacttggtgaaccgtaatgttgttttgagtggagggaggtgtcaggatgcagaggag
gcagaggcagaggcagaggagaagcaagcaggtatcaaggatgaggtggaaccaaagggt
gaagcagctccaggctctagtcaacagggcttgcatgtagaaattctagagtctgatgag
gaagaagtcaaggtgcttgaaaatgtgagtagtgccccctccaggaaggcatcagtgcaa
gccaagttaccaacaattccatcttgtgttgcatggagaactcgatcttcatgggggatg
attcaagataggctatcatacaatacatattttgaggcattgtctgatgagccaaaagag
gaggatgacacagaagttgaacttgatgaagaggacaacaatgatgatgacagtagtgaa
acttttgatgaagatgaagaaaaggacgaggaagaaaaggaagaggaagaggaagaggct
gagaggagaaaactcaagaacaggatttatacatccgatgatgacatgatcgatagtact
gttcctacctcaagatatgaggatactactgttcctacctcaagatatgaggatactact
gttcctacctcaagatatgaggatactactgttcatacctcaagatatgatattaagtgg
gaggaggatgaagatgcaagtgttgatatttctcagccaatctcctttaagaaagctacc
agatggaaccctgtggctgtgggcaatgacacatttaccgagcaacaaaagcaatcacga
tttacttgggagcttgagaggaggaaaaaggttaaacttgggatgaagacacatcctttg
tatgggcgggatttggactcagattcaagttcgtcgggtcctgaccagatcaaaaggtat
gaattcaaggatggtgatcataaagttgggaggaaaaagaagcattcatcgtccaaatca
ggcaagaaatctggccatgcaaccattctgaagagacagtctcttctgaagcttttgata
gataaaatgagcggtgatagaaatgaagaacctttcccatttgatcagaatcctcagctc
cagtttactttcaaggaaatgcatccgttggtattctcatttggagatgaagatttggta
ccagctgacaaaccagagcaagatggtgcattggatatgttgtgggctgactttgacttt
gctttagagtcggagaatattggcacttattatgatgatgagggtcaagaagagggcaat
caactagattttgctcttgccccagtaacaccttgttctcgagggaagcatgaatttatc
attgatgatcaaattggaatcagatgcaaatattgttccttagtaaatctggaaatcaaa
ttcatgttcccatcattggtctcaggttttgccgaaaaatctgcatggccaaatgccaaa
ggtgtgaagaatgcattgatgtttcacgacctttatgaagaagcagacagtggcaccgag
cactctcaagatttccatctatatggaacagtgtgggatctgattccaggggtcattagt
actatgtatgagcatcagcatgaagcatttgaatttatgtggacgaatctagttggtgat
attaggcttgatgagctgaagcatggagcaaggcctgatattgttggaggatgtgtgatc
tgtcatgctccagggacagggaagacacgattagcaattgtatttatccagacatatatg
aaagtgtttccagactgccgaccagtgattattgcacctcgtgggatgctttttgcttgg
gatgaggaatttaagaaatggaatattgatgctccttttcatataatgaatacagctgat
tacactggaaaagaggaccgagacatatgtaagttaataaagaaaaaacatcggacagaa
aagttgacaagacttgtgaaactgctttcatggaacaaggggcatggtattcttggaata
agttatggcctttatacaaaattaacgtctgaaaaacctggttgcacggaagaaaacaga
gtaagaagcattcttcttgaaaatcctggcttgcttgttcttgatgaaggacacacacct
aggaatgatcgaagtgtcatgtggaagacactaggaaatgttaaaacagagaaacgtata
attctatctggaactccttttcagaacaattttcttgagctttacaacattctttgtttg
gtaaggcctagatttggtgaaatgtttctgactaaagcaagagtgggtcgaaggtactgt
gtctcaaagaagcaaaaagataagttttctgataaatatgaaaaaggagtttgggcttca
ctaactagcaatgtaactgatgacaatgccgagaaagtaagatcaatattgaaaccgttt
gttcatattcataatggtaacattcttcgaactcttccaggcctcagagagagcgtgatt
attctgaaaccacttccccttcaaaagagtattattagaaaggtggaaaacattggttct
ggcaataactttgagcatgaatatgtcatttctttagcttctacacacccttcccttgta
acagccattaacatgtctgaggaagaagcttcacttattgataaacctatgcttcaaaga
ttgaggtcaaatccctatgaaggggttaaaaccagatttgtaatcgaagttgttcgtttg
tgcgaggcactaaaagagaaggttttgatttttagccaatttattcagccactagaactg
ataaaagagcaacttcgcaagttctttaagtggagagaagggaaggaaattcttcaaatg
gatggaaagatccttccgagatatcgccaggcttcgattgaagcctttaataatccaaat
aatgactccagggtgttacttgcatccacaaaagcttgctgtgaagggattagcttgaca
ggagcttcaagagttgtgcttctagatgttgtttggaacccagctgttggaaggcaagcc
atcagcagagcatttaggataggccagaagaaatttgtatatacatacaatttgataact
tatggaacaggtgaaggtgacaaatatgacaggcaagcggaaaaggatcacttgtccaag
ttggtcttctctacagaagacgagttcaataatgttaggaacatgctatctaaagctgaa
atggagcactgttctaagttgatttcagaagataaggttttggaggagatgacttctcac
gaccaacttaaaggaatgtttttgaagattcattatcccccaaccgagtcaaaccttatc
tatacttacaatcagattgctcctgcgtaa
DBGET
integrated database retrieval system
