Panicum virgatum (switchgrass): 120665628
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Entry
120665628 CDS
T07260
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 4-like isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120665628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120665628
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
120665628
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120665628
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120665628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
120665628
NCBI-ProteinID:
XP_039801172
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Position
3N:30189277..30194472
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AA seq
353 aa
AA seq
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MSTQAPPRFAPLPTEQSESQTDAGAAGYQFRLVSYNILAQVYVKSSFFPHSPSACLKWKS
RSKAVLTELKSFDADLMCIQELDEYDTFYKKNMENSGYSSIYIQRSGDKQDGCGIFYKTK
SAELVQKEGIHYNDLVEKYVHSDHVHSAPPNNSSPEEDTNAKPDNSKRGDPNDPRIRLKR
DCVGLLAAFKLSDPCDHILIVANTHIYWDPEWIDVKLAQAKYLLSRVSQFEQLISNKFNC
KPSVIIAGDFNSTPGDKVYNYLVSANLESTDEALIKLRSLYAANGGEPEFTNYTPGFTGT
LDYIFLSNGSSIKPTSLLCLPRGDSADVQGGLPNFQHPSDHLPIGADFLVLNR
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgagtacgcaggcgccccccaggttcgcccccctccccacggagcaatctgaatcccaa
accgatgccggggctgcggggtatcagttccggctggtctcctacaacatcttggcccag
gtttatgttaagagttcatttttcccgcattctccatctgcgtgcctcaagtggaaatct
cgatccaaagctgttctaacagaactcaagagttttgatgctgacctcatgtgtatacag
gagttggatgagtacgataccttctacaagaaaaatatggaaaattctggatattcaagt
atttacattcagagatctggagataaacaggatggctgtggtatattctataaaacaaaa
agtgcggaactggtgcagaaagaaggaatacattacaatgatttagtggaaaaatatgtt
catagtgatcatgtacatagtgccccgccaaataattcttcaccagaagaagacacgaat
gcaaagccagataatagcaagcgtggagatccaaatgatccacgcataagattgaagcgt
gactgtgttggtttactcgcagctttcaagctcagtgatccttgtgatcacattttaatc
gtggcgaatacacatatttattgggacccagaatggattgatgtaaagttggctcaggca
aaatatcttctttcaagagtctctcagtttgagcaactcatctcaaataaatttaattgt
aaaccttcagtgatcattgctggcgactttaattcaaccccaggcgacaaggtatacaat
tatcttgtatcagccaacttagaatctacagatgaagctctgatcaagttacgcagcctt
tatgctgcgaatggaggagagccagagttcacaaactacactcctggttttactggtaca
ctggactacatattcttgtcgaacggtagttcaataaaacctactagcctactttgcttg
ccacgaggggattctgctgatgtgcaaggaggtctgcccaactttcaacatcctagtgat
catttaccaattggtgctgattttcttgtacttaacagatag
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