Panicum virgatum (switchgrass): 120665631
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Entry
120665631 CDS
T07260
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120665631
09123 Folding, sorting and degradation
03018 RNA degradation
120665631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120665631
03041 Spliceosome [BR:
pvir03041
]
120665631
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120665631
mRNA degradation factors
5'-3' decay
Lsm complex
120665631
Spliceosome [BR:
pvir03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120665631
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF7452
Motif
Other DBs
NCBI-GeneID:
120665631
NCBI-ProteinID:
XP_039801178
LinkDB
All DBs
Position
3N:30200981..30204583
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AA seq
88 aa
AA seq
DB search
MSQNNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEG
RRITKLDQILLNGNNIAILVPGGSPPDV
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagaacaacccctcccagctcctcccctcagagctgatcgaccgctgcatcggg
tccaagatctgggtgatcatgaagggggacaaggagctcgtcggcaccctctgcggcttc
gacgtctacgtcaacatggtgctggaggacgtcaccgagtatgaatacacggctgaaggg
cgtcgcattacaaaacttgaccagatactgctgaacggcaacaacatagccattttggtt
cctggtggttcaccacccgatgtgtaa
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