KEGG   Panicum virgatum (switchgrass): 120665631
Entry
120665631         CDS       T07260                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03018  RNA degradation
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120665631
  09123 Folding, sorting and degradation
   03018 RNA degradation
    120665631
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120665631
   03041 Spliceosome [BR:pvir03041]
    120665631
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     120665631
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     120665631
Spliceosome [BR:pvir03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    120665631
SSDB
Motif
Pfam: LSM DUF7452
Other DBs
NCBI-GeneID: 120665631
NCBI-ProteinID: XP_039801178
LinkDB
Position
3N:30200981..30204583
AA seq 88 aa
MSQNNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEG
RRITKLDQILLNGNNIAILVPGGSPPDV
NT seq 267 nt   +upstreamnt  +downstreamnt
atgtcccagaacaacccctcccagctcctcccctcagagctgatcgaccgctgcatcggg
tccaagatctgggtgatcatgaagggggacaaggagctcgtcggcaccctctgcggcttc
gacgtctacgtcaacatggtgctggaggacgtcaccgagtatgaatacacggctgaaggg
cgtcgcattacaaaacttgaccagatactgctgaacggcaacaacatagccattttggtt
cctggtggttcaccacccgatgtgtaa

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