Panicum virgatum (switchgrass): 120665887
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Entry
120665887 CDS
T07260
Name
(RefSeq) ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120665887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120665887
03110 Chaperones and folding catalysts [BR:
pvir03110
]
120665887
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120665887
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120665887
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
120665887
Messenger RNA biogenesis [BR:
pvir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
120665887
Chaperones and folding catalysts [BR:
pvir03110
]
Heat shock proteins
HSP60 / Chaperonin
120665887
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
120665887
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
120665887
Exosomal proteins of other body fluids (saliva and urine)
120665887
Exosomal proteins of breast cancer cells
120665887
Exosomal proteins of colorectal cancer cells
120665887
Exosomal proteins of bladder cancer cells
120665887
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
MatP_C
Motif
Other DBs
NCBI-GeneID:
120665887
NCBI-ProteinID:
XP_039801537
LinkDB
All DBs
Position
3N:37666655..37670763
Genome browser
AA seq
577 aa
AA seq
DB search
MASANAISAASLLRPLSQGWARRARNGRSQRFVVRADAKDIAFDQKSRAALQAGVEKLAN
AVGVTLGPRGRNVVLDEYGSPKVVNDGVTIARAIELYDPMENAGAALIREVASKTNDSAG
DGTTTASVLAREIIKLGLLSVTSGANPVSLKKGIDKTVQGLIQELENKARPVKGGGDIKA
VASISAGNDEFIGSMIAEAIDKVGPDGVLSIESSSSFETTVDVEEGMEIDRGYISPQFVT
NLEKSIVEFENAKVLITDQKITSIKEILPILEKTTQLRAPLFIIAEDITGEALATLVVNK
LRGILNVAAIKAPSFGERRKAVLQDIAIVTGAEFLAKDLGLLVENATEEQLGTARKVTIH
QTTTTLIADAASKDEIQARVAQLKKELAETDSVYDTEKLAERIAKLAGGVAVIKVGAATE
TELEDRQLRIEDAKNATFAAIEEGIVPGGGTAYVHLSNIVPSIKEKIEDPDERLGADIIQ
KALVAPASLIAHNAGVEGEVVVEKVKESEWEVGYNAMTDKYENLIESGVIDPAKVTRCAL
QNAASVAGMVLTTQAIVVEKPKPKPQVAEPSEGTLTV
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgccaacgccatctccgccgcctccctcctccggcccctctctcagggctgg
gcgaggagggccaggaacggccggtcgcagcggttcgttgtccgtgccgacgccaaggac
atcgccttcgaccagaagtccagagcggcgctccaggccggcgtcgagaagctcgctaat
gccgtcggtgtcaccctcgggccccgaggaaggaatgtagttctggatgagtatggcagc
cccaaagttgtaaatgatggagtaactattgcccgggctattgagctgtatgatccaatg
gaaaatgctggtgcagcactaatccgtgaggttgctagcaagaccaatgattctgctggt
gatggaactacaactgcttctgtccttgctcgtgaaattatcaagctaggccttctgagt
gtaacgtctggtgcaaaccctgtgtcacttaagaagggaattgacaaaactgtgcagggt
ctaattcaggagcttgagaataaggccagaccagtcaagggtggtggtgatatcaaagct
gttgcgtctatctctgctggcaatgatgaattcatcggatccatgattgccgaagcaatt
gacaaagtgggccctgatggtgtcctttcaattgaatcttcatcatcttttgagactact
gttgatgttgaagaaggaatggagattgaccgtggatatatttctccgcaatttgttacc
aatctcgagaaatctattgtggagtttgagaatgctaaggttcttattactgatcagaag
atcacaagcataaaggaaatccttccaattttggagaagaccacacagctgagagcccca
ctgttcattatcgctgaggacattactggtgaagctttggcaactcttgttgttaacaag
cttcgaggaatccttaacgttgctgcaattaaggccccaagctttggtgagcggcggaag
gctgtccttcaggacattgccattgtcacaggtgcagagttcctagcaaaagatcttggt
ttgttggttgaaaatgctacagaggaacaacttgggacagcaaggaaagtcacgatacat
cagaccacaaccaccctgatagcagatgcagccagtaaagatgagatccaagcgagggtt
gcacagctaaagaaggagcttgctgaaactgattcggtttatgatactgagaaattggct
gagagaattgcgaaacttgctggtggtgttgctgttatcaaggttggcgctgcaaccgaa
actgagcttgaggaccgccagctacgaattgaggatgcaaagaatgctacttttgccgct
atcgaggagggcattgttcctggaggtggtacggcctatgtgcacctatccaacattgtc
ccctcgattaaggaaaaaattgaggatcctgatgagcgccttggtgctgacattattcaa
aaggcattggtggcacctgcttcactgatcgcacacaatgctggagtggagggtgaagtg
gttgttgagaaggtcaaggagagcgagtgggaagtgggttacaatgcaatgacggacaag
tacgagaacctgattgagtccggtgtgatcgaccctgccaaggtgactaggtgtgcgctc
cagaatgcggcctcagtggcagggatggtcctaaccacacaggccattgttgttgagaag
ccgaagccaaagcctcaagttgctgagccctcggagggcacccttactgtgtaa
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