Panicum virgatum (switchgrass): 120665956
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Entry
120665956 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase hel2-like
KO
K22381
E3 ubiquitin-protein ligase ZNF598 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120665956
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120665956
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120665956
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAH_ZNF598
zf-C2H2_13
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
120665956
NCBI-ProteinID:
XP_039801613
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All DBs
Position
3N:42856979..42867149
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AA seq
846 aa
AA seq
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MDDSCAVCAETLEWVAYGPCGHRDVCSTCVIRLRFVMDDKKCCICKTVCPSVFVTKALGE
YTRVVNDFSLFPTGVNEGKAGDFWYHEDTQAYFDDADHYKMIRAMCRLSCSVCDNAEDQV
ALAAQAKRRSKFRSIDQLKGHLFHVHRLHMCNLCLEGRKVFICEQKLYSRSQLTQHMKTG
NSEVDGSEVERSGFAGHPMCEFCKSSFYGDNELYTHMSREHYSCHICQRQHPGQYDYFRN
YDDLELHFRKDHFLCEDEACLAKKFVVFPNEAELKRHNAMEHGGRMSRAQRNAALQIPTS
FIYRRNEQDQRRGTVRGRTAHHDGTESYILSSGQNGRATTDNGHVGRVENVSGSLQSLSV
GSSSGGAEVGSRTGRVLEQLSFPPLSNPDIPDTRVDSVPDETSFPSLSEQQSRYALALNQ
SARGAARLGDESLFPPLPGSSNNRGPASAQQGLQSLAKSTLAARLQQRSKGPVKVLNTAR
SRPSENPELLPSSTQTWPTPDQGLLLPGSSQLRIGTQATRENGFMPAASSNSAWNPAAPN
KIKHSVSTPNLVSGGSSGQASLSTAYGSNRSQEPPQGSQALPVAEDVRAANKSLVERMRS
ALGMDEDRYSAFKEIAGEYRQGIIDTLEYLSYVEQFGLSHLVPEMARLLPDPQKQRELAD
AYYTNIRFRSLQENGGGTSSQEASRKKKGKGKVPVTESSAAKPVKDALADNFLDTVRRLQ
SNHQAQEGEAEVLSKDGYRPSKGVQLSAGSSSSLDSDTGYHSKASGAKDNAGKGGNSSSN
KQPKKTSKFLRARLGDNSLATLDLSRPSVSPEQPERESQGPQMGLPVRGAWKNGGGQKLF
SSNGRK
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atggacgactcctgcgcggtgtgcgcggaaacgctggagtgggtggcctacgggccgtgc
gggcaccgcgatgtgtgctccacctgcgtgatccgcctccgtttcgtcatggacgacaag
aagtgctgcatctgcaagaccgtctgcccctccgtcttcgtcaccaaggccttgggtgaa
tacacgagagtggtcaatgatttctctctgtttcccactggggtaaacgagggcaaggca
ggggatttctggtaccacgaggatacacaggcatactttgatgacgcagaccactacaag
atgatacgagcaatgtgtcggctttcttgtagtgtttgtgacaatgcagaggatcaggtt
gctcttgctgctcaagcaaagcgcagaagtaagttcaggagcattgatcaactgaagggg
catttgttccatgtgcataggttgcacatgtgcaatctttgcttggaggggaggaaggtg
ttcatttgtgagcaaaagctttattcaaggtcccagttaactcagcatatgaaaactggt
aactctgaagtggatggctctgaggtagagcgtagtggttttgctgggcatccgatgtgt
gagttctgcaaaagttcattttatggagataatgagctttacacacatatgtccagagaa
cactattcttgccacatatgccaacggcagcatcctgggcagtatgactattttcggaac
tatgatgatcttgagttgcattttcggaaagatcatttcctctgtgaagatgaagcatgt
ttggcaaagaagtttgttgtcttcccgaatgaagcggagctcaagagacataatgcaatg
gagcacggtgggcggatgtctcgtgctcagagaaacgctgcacttcagatacctaccagt
tttatatatcgcagaaatgagcaagaccaacggcgtggcacagttagggggcgtactgct
caccatgatggaactgagagttatatcttatcatcggggcagaatggccgtgcaaccact
gacaatggccatgtgggccgtgttgagaatgtttcagggtctttacagtcattaagtgtt
ggttctagctctggaggcgcagaagttggttcaaggaccggacgagtacttgaacagttg
tcctttccacctctttcaaacccagatattcctgacactagagttgactctgttcctgat
gaaacctcatttccttcattgtcagagcagcaatccagatatgctcttgctctcaatcag
agtgcaagaggcgctgcgaggttgggggatgagtcattattccctcctttgcctgggtct
agtaacaacagaggtcctgcttcagcacaacaggggctacaaagtctagccaagagcaca
ctcgcagcaaggcttcaacaacgtagcaagggccccgtgaaagtacttaatactgctcgg
tctcggccctctgagaatcctgaattgctccctagttccacccagacatggcctacacct
gatcaggggctactcctgcctggatcttcccagcttcgaattggaactcaagcaacaaga
gaaaatgggttcatgccagctgcctccagtaactcggcttggaatcctgctgctccaaac
aagataaagcattctgtttccactcctaatcttgtgtctggtggctcctctggccaagca
tcgttaagtacagcttatggtagcaacagaagtcaagaaccacctcaaggtagccaagct
ttgcctgttgccgaggatgttcgtgctgcaaacaaatctcttgttgaaagaatgcgttct
gctttgggaatggatgaggacaggtactctgcattcaaagagattgctggtgaataccgt
caaggtatcatagatactttagagtatctttcgtatgtcgagcagtttggactgtcgcac
cttgttcctgaaatggctaggctcttaccggatcctcaaaagcagagggaacttgctgat
gcatattatacaaacatacggtttagaagccttcaagaaaatggtggtggaaccagctca
caagaggccagccgtaaaaaaaaggggaagggaaaagttcctgttacggaaagcagtgct
gctaagcctgtgaaagatgcactagcagataactttctggacactgtaagaaggcttcaa
tcaaaccaccaagctcaggaaggagaggctgaggtgttgtcaaaggatgggtatcgacct
tccaagggggtccaactatcagctggatcttcatctagtcttgacagtgatactggttac
cattcaaaagcttctggtgccaaagataatgctggcaaaggaggcaatagcagcagtaat
aagcaaccaaagaagacatcaaagtttctcagagctcgtttaggtgacaactcattagcc
acacttgatttaagtcgtcctagtgtgagtccggaacaacctgaaagagaatcacaaggc
ccacagatggggttgcctgttcgaggggcttggaagaatggtggagggcagaaactcttt
tcgagcaacggaaggaagtag
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