Panicum virgatum (switchgrass): 120665997
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Entry
120665997 CDS
T07260
Name
(RefSeq) probable solanesyl-diphosphate synthase 3, chloroplastic isoform X1
KO
K05356
all-trans-nonaprenyl-diphosphate synthase [EC:
2.5.1.84
2.5.1.85
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00900
Terpenoid backbone biosynthesis
pvir01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
120665997
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
pvir01006
]
120665997
Enzymes [BR:
pvir01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.84 all-trans-nonaprenyl diphosphate synthase [geranyl-diphosphate specific]
120665997
2.5.1.85 all-trans-nonaprenyl diphosphate synthase [geranylgeranyl-diphosphate specific]
120665997
Prenyltransferases [BR:
pvir01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
120665997
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Ortholog
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GFIT
Motif
Pfam:
polyprenyl_synt
HEPPP_synt_1
Motif
Other DBs
NCBI-GeneID:
120665997
NCBI-ProteinID:
XP_039801695
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All DBs
Position
3N:complement(45344617..45354731)
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AA seq
400 aa
AA seq
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MAAPSSSLASTSHLSRRATAAVGLCSTRCLQRIRCSWAGGRAAYRRRAPGVCFVVSPSQP
GLAAVNVPAATISERTLVSSLLEVVSDDLLKLNNNLKSLVGAENPVLVSAAEQIFGAGGK
RLRPALVFLVSRATAELAGLSELSTEHQRLAEIIEMIHTASLIHDDVIDDSGMRRGKETI
HQLYGTRVAVLAGDFMFAQSSWFLANLENIEVIKLISQVIKDFASGEIKQASTLFDCDIT
LDDYLLKSYYKTASLIAASTRSAAIFSGVSTAICEQMYEYGRNLGLSFQVVDDILDFTQS
AEQLGKPAGSDLAKGNLTAPVIFALQDEPKLREIINSEFSETDSLAAAIDLVHRSGGIRR
AHELAREKGDLAIQNLQCLPRSDFRSTLEKMVKYNLERIE
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgccgtcgtcctccctcgcctccacctcccacctctcccgccgcgctacggcc
gcggtcggcctgtgctccacccgctgcctgcagcgcatccggtgcagctgggccggcggc
agggcggcgtacagacggcgcgcgccaggtgtttgcttcgttgtctcacccagccagcca
ggtcttgctgcggtcaacgtgccggcggcgaccatctccgagcgtactttggtgtcctcg
cttttggaggtcgtctcggacgatttgctgaagcttaacaacaatctcaaatcgcttgtt
ggtgcagaaaatccagttttggtttctgcggccgaacaaatttttggtgccggtgggaag
agattaagaccagcattagtttttctggtgtctagagcaactgctgagttagctggtttg
tcggagctaagtacagaacatcaacgcttagcagagattattgagatgattcacactgca
agtttaatacatgatgatgtcatagatgatagtgggatgcgaagagggaaggaaactatt
catcagctatatggtacacgggtggctgtacttgctggtgattttatgtttgcgcaatct
tcttggttccttgcaaacctagaaaacattgaagttataaagctgatcagtcaggtaatc
aaggacttcgcaagtggtgagataaaacaagcgtccactctgtttgattgtgacatcacc
cttgacgattatcttctcaagagctactacaaaactgcatctctgatagcagcaagcaca
agatcagccgccatattcagtggcgtcagcaccgcaatttgtgaacaaatgtatgaatat
ggcaggaatcttggcctctccttccaggtagtcgatgacatcctggacttcacccaatca
gctgagcaacttggcaaaccagcaggaagtgacttggcaaagggaaacctgacggctccg
gtcatcttcgctttgcaagatgaaccaaagctgagggagatcatcaattctgagttcagt
gagacagattcgttagctgctgcaatagaccttgttcatagaagtggtggaataaggagg
gcacatgagcttgccagagagaagggtgatttggccatccaaaatctgcagtgccttccg
agaagcgacttccgaagtacccttgagaagatggtgaaatataatcttgaaaggattgag
tag
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