KEGG   Panicum virgatum (switchgrass): 120666038
Entry
120666038         CDS       T07260                                 
Name
(RefSeq) coilin-like
  KO
K13150  coilin
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvir03041]
    120666038
Spliceosome [BR:pvir03041]
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    120666038
SSDB
Motif
Pfam: Tudor_Coilin Coilin_N
Other DBs
NCBI-GeneID: 120666038
NCBI-ProteinID: XP_039801758
LinkDB
Position
3N:complement(46691967..46702223)
AA seq 673 aa
MARPPPEAPAPVRLRLVFENRRLLRRAERDEGLRRCWFLLRPELATVADLAAHVAARFRL
RRSCPSGVILSMDGFALPPFESTCIFRDKDIIRVIQKSCKKLVGHIDMQSIQDPEVVEKR
AHPVDYQILAIQYQKDDSKNQEEEEHGDRQPEENATVSHSTENNGTSSKRKWHDDVARVP
EMKRKKLEVTNSRDHIDDGKQDNVHQCQDKSVSKKLKSSAIDIETKTLQPEIAPLVQQQK
IERNNQTEMKCEMEVSDCNAQGDTKKLESRSARRKKIKRQMRQKAKLQTEKNVHEDSPIA
ADCPSSSNQDGLPGPSSNQNGLHAPFSSHKTDEEESDTSDEIVPVVVRPGHIRFEPAGGQ
PDKSPAKEMQGNFEWSGTMSKKKGQKWGMNSSNKKNGNSMEANHHFMDCKITENVSCAVS
NQKDDESNNIDTSSVKIIEEKFNGEPLDFERFYPLTRLPKEGDFIAYRLVELSSSLCPEL
SSYRVGKVLIYDLVSMRIILLPVPEYPIVTEENKPEDESGMFVDLSPYKEDGSLEIEYSS
LLDVRLLKGIESVPGTVRTPSAETCKEGGSMAGKTVTLDNNEGHIDCQKPGTVPNNTKEV
TLEKTKNTVWENVEPSNGKTDVQGNGWGTWKRNPSTSAWSYRALRSSALGPTMAMLRGKN
NQRGKPPNRKNGK
NT seq 2022 nt   +upstreamnt  +downstreamnt
atggctaggccgccgccggaggcgcccgcgccggtgaggctccgtctggtgttcgagaac
cgccgcctcctccggcgtgcagagagggatgaaggcctcaggcgctgctggttcctcctc
cgcccggagctcgctaccgtcgccgacctcgccgcccacgtcgctgcgcgcttccgcctc
cgtcgctcctgccctagcggcgtcatcctctcgatggatgggtttgccttaccaccattc
gaatcaacctgcatcttcagggacaaggatatcataagggttatacaaaaatcctgcaag
aagctggtagggcacattgatatgcaatctattcaagatcctgaggtagtagagaagagg
gcacatccagttgattaccaaatccttgccatccagtatcaaaaggatgacagtaagaac
caagaagaagaggaacatggtgatcgccagcctgaagaaaatgcaactgttagccacagc
acagaaaataatggtacaagttcaaagagaaagtggcatgatgacgttgcaagagtacct
gagatgaagagaaagaagctggaggtgacaaattctcgagatcacatagatgacggcaag
caggataatgttcatcaatgtcaggataagagtgtatctaaaaagttgaagtcatcagct
attgatattgaaactaagacactacaacctgaaatcgctcccttggtgcaacagcaaaaa
atagagaggaacaatcaaactgagatgaaatgtgagatggaggtgtcagactgtaatgct
caaggtgacacaaaaaagttggagagtcgaagtgctcgtcgcaagaaaatcaaaaggcaa
atgaggcagaaagcgaaattgcaaacagaaaagaatgtgcatgaggattcaccaatagct
gctgattgtccatcatcaagcaatcaagatggcttgcctggtccatcaagcaatcaaaac
gggttgcatgctcctttttcaagccataaaacagatgaggaagaatctgatacatcagat
gagattgttccagttgtggttcggcccggtcacattcgctttgaaccagcaggtggacaa
cctgacaagtcaccggcaaaggaaatgcagggcaatttcgaatggagtggaacaatgagc
aaaaagaagggccagaagtggggaatgaatagctcaaacaagaaaaatggaaacagcatg
gaagctaaccatcatttcatggactgtaagatcactgaaaatgtttcttgtgctgtcagt
aatcaaaaggatgatgaaagcaataatattgatacgtcaagtgtgaagattattgaagag
aagtttaatggtgaacccttggattttgagagattttaccccctaacgcgacttccaaag
gagggagatttcattgcatatcgattggtggagctgtcttcctcattgtgtccagagctg
tcttcttaccgtgtcggaaaagttctgatatatgatcttgtatcaatgcgtatcattctc
ttacctgttcccgagtatccgatcgtcactgaggaaaacaaacctgaggatgagtctggt
atgtttgtggacttgtcaccttacaaggaagatggctccttggagatcgagtactcgtca
cttcttgatgtaaggctactgaagggtattgagtcggtaccagggactgtcaggactccc
tctgcagaaacatgcaaagaaggtggatcaatggctggaaagacagttaccttagacaat
aatgaaggtcacattgactgtcagaaaccaggcacagtgccaaacaacactaaagaagtc
acactagaaaagacgaagaatacagtctgggaaaatgtcgagccctccaatggcaaaact
gatgttcaggggaatggttggggaacatggaaacgaaatcctagtacgtctgcttggtct
tatagggcgctcaggagcagtgccctcggccccacgatggcaatgttgaggggcaaaaac
aaccagaggggtaaaccacccaatcgaaagaatgggaagtga

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