KEGG   Panicum virgatum (switchgrass): 120666039
Entry
120666039         CDS       T07260                                 
Name
(RefSeq) lysine-specific demethylase JMJ18-like
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:pvir01009]
    120666039
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pvir03036]
    120666039
Enzymes [BR:pvir01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     120666039
Protein phosphatases and associated proteins [BR:pvir01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     120666039
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    120666039
SSDB
Motif
Pfam: JmjC JmjN zf-C5HC2 KDM5_C-hel
Other DBs
NCBI-GeneID: 120666039
NCBI-ProteinID: XP_039801759
LinkDB
Position
3N:complement(46706980..46716699)
AA seq 791 aa
MVSSSASPEEAGPARRGENRRMRGGAAASLDHCSSRNSEEDFDGPTTTCGKWHPGESQRP
EIDDAPIFTPTEEEFKDAIGYISSIRPQAEKYGICRIIPPSSWRPPCSLKEKSFWESMEF
NARVQQVDKLQNREPTKKRTQPRVQRKRKRRKRLRFGMTHRRPNSKTDSEDKFGFQSGSD
FTLEEFHKYADEFKQEYFGMKGSDEIFLSEIKNHKKIWEPSVEEIEGEYWRIVLGSTDEV
EVDYGADLDTATFGSGFPKLSSDANMQDPYAVSCWNLNNLPRLPGSVISFENEDISGVVI
PWLYVGMCFSSFCWHVEDHFLYSLNYMHFGEPKVWYGVPGCEAVKLEESMRKNLPKLFEE
QPDLLHELVTQLSPSVLKSEGVSVYRAVQKPGEFVLTLPRAYHSGFNSGFNCAEAVNVAP
VDWLPHGQCAVELYRGQHRKTSISHDRLLLKTAKAAVKQLWMNLFDCKSGEGKYRWLNVC
GKDGVLTSAVKTRVEMEGAAREVNGNLKSKKMDKDYDSTDRECFSCFYDLHLSAVSCQCS
PNRFACLNHTNILCSCEMNRKVAFFRHSMKELNTLVEALEGDQTAVLLWGQDHLGLVRPS
GNVQKRKLDSGSSTEFSGLTIDVNAVSGFGGSQDGCHDLEKPVGFHQESVVQHNCLDLNI
EDPPSSSRIKEEHHKDRMFINHGPLQNTNIPFRLTSECSSSSSVNCSPSLFSPTRNRTSN
SDLAWNTTKKLFGVDIENFANHSDIQAIPMVKVSNGSEITKEHEKSRFCNNSCPDEVTLD
RLPKKVKLLEG
NT seq 2376 nt   +upstreamnt  +downstreamnt
atggtttcctcctccgcctcacccgaggaggccggccccgcgcggcggggggagaatagg
cgaatgcgcggcggcgcggcggcctcgctggatcactgctcatcaagaaatagcgaggaa
gactttgatggacctacaactacatgtggaaagtggcatccaggtgaatcgcagagacct
gaaattgatgatgctcccatcttcactccaactgaagaggaatttaaggatgcaatcggg
tacatttctagcattcgtccacaagcagaaaaatatggaatttgtcgtattattccacca
tcttcttggagacctccatgttctctgaaggagaagagtttctgggaatctatggagttc
aatgcccgagttcaacaagttgacaagcttcaaaacagggagcccacaaaaaaacgaaca
cagcctcgagttcagaggaaaagaaagagaagaaagagacttaggtttgggatgacacac
aggcgtcccaattctaagaccgactcggaagacaagtttggctttcaatctggttctgat
tttacattagaggagtttcataaatatgctgatgagttcaagcaggaatattttggaatg
aaagggagtgatgaaatttttctttctgaaattaaaaaccacaaaaaaatatgggaacca
tcagtggaggaaattgagggagaatattggcggatagtcttagggtctactgatgaagtt
gaggtggattatggtgccgatttggacactgcaacttttggtagtgggtttcctaaatta
tcttcagatgcaaatatgcaggatccatatgctgtgtcttgttggaacttgaataatctg
ccacggctgcctggctctgttatctcatttgaaaatgaggatatatctggtgttgtaatt
ccatggctttatgtgggaatgtgcttctcttcattttgctggcatgttgaagaccatttt
ctttattctctgaattatatgcattttggtgaaccaaaagtttggtatggtgttcccggt
tgtgaagcagtgaagcttgaagaatcgatgagaaagaacttaccaaaactgtttgaagaa
cagcctgatctacttcatgagctggttacacagttatctccatctgttctaaaatcagaa
ggagtttctgtttaccgggctgttcagaagccaggtgaatttgttctgacactacctcga
gcataccattctggattcaactctggtttcaactgtgcagaggcagtaaatgttgctcct
gtggattggctgcctcatggacagtgtgctgttgagctctatagagggcagcaccgcaag
acatcaatatcacacgacaggttactactgaagactgcaaaagcagctgtgaaacaactt
tggatgaacctttttgattgcaagagtggtgaggggaaatacagatggctgaacgtgtgt
gggaaagatggagtcctgacaagtgctgttaagacaagagttgaaatggagggtgcagca
agggaggtgaatggtaatctgaaaagtaagaagatggacaaggattatgattccacagac
cgggagtgcttttcatgcttctatgatctccatttgtctgctgtcagttgccagtgctca
ccaaaccgctttgcttgcttaaaccatacaaacattctttgttcatgtgaaatgaacagg
aaagttgcattctttcgacatagcatgaaggagcttaatactcttgtagaagctttggag
ggtgatcaaactgcggtcttgctttgggggcaggaccacctaggcttagttcgcccatct
ggtaatgtgcagaagaggaagttggactcaggtagcagcacagaattttctggtttaacg
attgatgtcaatgctgtttctggatttggtggcagtcaagatggctgtcatgaccttgaa
aagcctgttggattccaccaagagagtgtagtccagcacaattgtcttgatctcaacata
gaagatccaccaagcagttcgagaataaaagaagagcatcacaaggataggatgtttatc
aatcatgggcctctacagaataccaatattccatttagattgacctcagagtgcagttca
tcatcatctgtgaattgttcacccagtttattttctcctacaagaaatcgaaccagcaat
tctgacctagcttggaacactactaagaaactatttggtgttgacattgaaaattttgcc
aaccattctgatattcaggctattccaatggtaaaagtttcaaacggatctgagattaca
aaggagcatgaaaaatcaaggttctgcaataattcgtgtcctgatgaggtcacacttgac
aggctgccaaagaaggttaaactgctagaaggatag

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