Panicum virgatum (switchgrass): 120666148
Help
Entry
120666148 CDS
T07260
Name
(RefSeq) putative E3 ubiquitin-protein ligase SINA-like 6
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120666148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120666148
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120666148
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
120666148
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_RING
Sina_ZnF
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
zf-RING_10
zf-C3HC4
zf-C3HC4_2
zf-RING_14
Motif
Other DBs
NCBI-GeneID:
120666148
NCBI-ProteinID:
XP_039801869
LinkDB
All DBs
Position
3N:complement(52365217..52368569)
Genome browser
AA seq
326 aa
AA seq
DB search
MAKFSFDDADDEPPAAAAASGSLKRKREDGPDEAGGGGGPPKARIFADRGGGPEGGAVVR
AERAEGSGRKAVETVVDGEADGISVRIDPDVLDCSICFEPLRPPLYQCQNGHVACFSCWS
RLTNKCHICSNEANFTRNIALEKVVESVKSACSYAKWGCSKLVSYSLRNAHEESCLFAPS
KCPIPGCGYRGFTGWWSGHFHTNHNNDSLRFSYGQCLEVSLEISVPFLVLLSEDDHLFLL
NKNVMPYGHALSVGCLRSGSLNWNFFYEMKATCEGNTENSLQLKASVTNTRDWCGLHPTE
AFLLVPYAFCKSGKLTLFISIERGGC
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atggccaagttctccttcgacgacgccgacgacgagcctcccgccgccgccgccgcttcc
gggagcttgaagaggaagcgcgaggacggcccagacgaggccggcggcggcgggggaccc
ccgaaggcccgaatttttgccgaccggggcggagggccggagggaggcgcggtggtgagg
gcggagagggccgaagggagcggccggaaggcggtggaaactgtcgttgacggggaggcc
gatgggattagtgtgcggatcgaccctgatgtgcttgattgctccatctgcttcgagccc
ctccgaccgcccctctaccagtgccaaaatggccatgtagcatgcttttcctgctggtcg
aggctcaccaacaagtgtcacatttgttctaatgaagctaacttcacacgaaacattgca
ctggagaaggttgttgagtcagtcaagtccgcctgctcatatgccaaatggggctgtagc
aagttggtcagttattcacttagaaatgctcatgaagaatcttgcctctttgctccttca
aagtgtcccattcctggttgtgggtatagaggattcaccggatggtggtcaggacatttc
catacaaaccataataatgatagcctacggttctcatatggccagtgcttggaagtgagt
ttggaaatatcagttccttttctagttcttctatccgaggatgatcacctattccttctc
aacaagaacgtgatgccctacggacatgcgctttcagttggttgccttcggtctggcagt
ctgaactggaatttcttctatgaaatgaaagcaacttgtgagggaaacactgaaaacagc
ctgcaattgaaggcttctgtcacgaacacaagggattggtgtggcctccaccctacagaa
gctttccttttggttccttatgccttctgcaaatctggcaaactaacactattcatctct
attgagagagggggttgctga
DBGET
integrated database retrieval system
