Panicum virgatum (switchgrass): 120666216
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Entry
120666216 CDS
T07260
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 26-like isoform X1
KO
K11858
ubiquitin carboxyl-terminal hydrolase 48 [EC:
3.4.19.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120666216
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120666216
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120666216
Peptidases and inhibitors [BR:
pvir01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
120666216
Ubiquitin system [BR:
pvir04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
120666216
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
DUSP
UCH_1
ubiquitin
zf-FPG_IleRS
Motif
Other DBs
NCBI-GeneID:
120666216
NCBI-ProteinID:
XP_039801933
LinkDB
All DBs
Position
3N:54953358..54963298
Genome browser
AA seq
1116 aa
AA seq
DB search
MSRHNTRNKNKRPRSDESNSPSAAVFKKIHANGNISKSDIRQLYMVWKPVCQGCHGNTKD
SPNCFCGLIPTTNGVRKTGLWQKMQEIVRGLGPNPSRDLRDSTATPAGLTNLGATCYANS
ILQCLYMNSSFRSGIFSLELDVLEKYPVLDQLARLFAQLHSSKMAFIDSAPFIKALELDN
GVQQDSHEFLTLFLSLLEQSLSHSKVPEARTIVQHLFCGSVSHVTRCSSCGKDSAASSKM
EDFYELELNIKGLNNLEESLNDYFSEEALDGENQYFCESCQKRVDATRCINLQSLPPVVN
FQLKRYVFLPKVIYLYPNLIHSCVVTCSFHISLVLCILILYFHKEFLSNFSHCQTTTKKK
ISSTFSFPGQLDLGKRLSNPSSSCTYDLAAILIHKGTGANSGHYVAHIKDESNGQWWEFD
DETVSKLGLHPFGEKQGKASNKDDEKSQGVSAADSMTNNNSNGHQEAAPTSTTTEMFSST
DAYMLIYKCTSKDVNGTESNKNMEINESLPRHLLDQISELNASYMKSCEEYQSKKDSHLA
YVTERRQEVKSILTEAPADPEVDSYFWISTDWLRQWADNITPSSIDNGPIQCEHGKVPAS
KVTSMKRLSSTAWQKLFSKYGGGPTLSSDDCCMECLKDGAKNAVSADVYRERKASLKNIA
EAALAGNCPDGPSYFISKTWLTHWLRRKNADIPSDADNGPTSALRCCHGDLLPEHAPGAK
RVSVPESLWLFLYQTINEKKADDIVTFPSDSQPCEICNQELSDVASVEGNLRAVKLKQRQ
NHEKLISGKSFALHPGQKYYLVPSSWLSEWRAYITATGKNISSLPEPQSLEAIVDSLICE
KHSKLLQRPLDLVCKRGNITQKTSNTDGLTIIPEYDWKLFSGEWSATPEKGLSAEIAFSK
SSQDKLPGASEATPTMDGDLDQSLDGANDDVGGREPYVRTDPEVCEECIGERESCALVEK
LNYQNEDIHVYLVRGKEAPKSVKEASKSFTVSDRRTSKRSRRTNSGNSISLKVSGSTSVY
QLKLMIWESLGIVKENQKLHKGSVEIEDDLATLADKSIFPGDVLWVRDSEIYENRDIADE
ISEQKADMLQTEEGFRGTLLTSSVSAQLCQDVAFSE
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgagcaggcacaacactcgcaacaagaacaagaggccacggtccgatgaatccaatagc
ccgtccgcggctgttttcaagaagatacatgccaatggcaatatctcgaagagcgatatc
cgacagctttacatggtgtggaaaccggtttgccaaggctgccatgggaacaccaaggac
tccccaaattgtttctgtggattaattcccaccaccaacggggttaggaaaactggcctc
tggcagaaaatgcaggagattgttcgtggcctcggtcctaatccatcgagggacctacgt
gattccactgcgacgcctgctggattgactaacctgggcgcaacctgttatgcaaatagc
atacttcagtgcctttacatgaacagttccttccgctcgggcattttctctttggagctg
gatgttctggagaagtatcctgttctggatcagctggctaggttgtttgcgcagctgcac
tctagcaaaatggctttcatcgattcagcaccttttattaaggcattggaattagacaat
ggtgtccagcaggacagccatgaatttctcaccttgtttctgtctctgctcgagcaatca
ttaagtcactccaaggttcctgaagctagaacaattgtgcaacatctgttttgtggcagt
gtatcacacgtaacaaggtgttcatcatgtggaaaggattctgcagcatcttcaaaaatg
gaggacttctacgaactggagctgaatattaaaggtttaaataacttggaagaaagtctg
aatgactactttagtgaggaagcactggatggggagaaccaatacttttgtgaatcatgc
cagaaaagggtagatgccactcgctgcataaatcttcaatcacttcctccagttgtcaat
ttccagctgaagcgctatgtattcctcccaaaggtaatatacctttacccaaacctcatc
catagttgtgttgtaacatgttcctttcacatttctttagtcctgtgcattcttattctt
tactttcacaaagaatttttatcgaacttttctcattgccagacaactacaaagaaaaag
atttcttcaacattcagtttcccaggacagcttgatttgggaaaacggttgtcaaacccc
tcatctagttgtacttatgacctggctgctattttaattcacaagggtactggtgctaat
agtggacactatgttgcacatataaaggatgaaagcaatgggcagtggtgggagtttgat
gatgagaccgtatccaaacttggtctgcatccttttggtgagaaacaaggaaaggcatca
aataaagatgatgagaaatcccaaggtgtttccgcagcagattctatgacaaataacaat
agtaatggtcaccaggaggcagcacccacttctaccacgacagagatgttttcatctacg
gatgcctatatgttgatctacaaatgtactagtaaggatgtcaatggcactgaaagcaat
aaaaatatggaaatcaatgagtcacttccgcgccatcttctggatcaaattagtgaacta
aatgcatcatatatgaaatcgtgtgaggaataccaaagcaagaaggacagccatctggca
tatgtaacagagaggcgtcaagaagtaaaatccattctaacagaagcacctgcagatcca
gaggttgattcgtatttttggatctcaacagactggcttcgccaatgggcagataacatt
actccctcctccattgacaatggtccaattcaatgcgaacatggaaaggttccagcatct
aaagtcacatcaatgaagcgactatcatctacagcttggcagaaactattttcgaaatat
ggagggggaccgacgttgagcagtgatgactgttgcatggagtgtcttaaagatggggca
aaaaatgcagtatctgctgatgtctaccgtgaacgtaaagcgtctttaaaaaatattgca
gaagcagcacttgctggtaactgtccagatggtccttcttactttatctcaaaaacatgg
ttgactcattggctgaggaggaaaaatgctgatatcccatctgatgctgataatggacca
acaagtgctctaagatgttgccatggggatcttctgcctgagcacgctccaggggcaaag
cgggtatctgtaccagagagcctctggttatttctctatcaaaccatcaacgagaagaag
gctgatgatattgtgacttttccatcagattctcaaccatgtgaaatctgcaatcaggaa
ttatctgatgttgcttctgtggagggtaatcttagagcagtgaaactcaagcaacgacag
aaccatgaaaagttaatatctgggaaaagcttcgcacttcatcccggtcaaaaatattat
ttggtaccttcatcttggttgtcagaatggagagcctatattacagcgaccgggaaaaat
atttcttcgttaccagaacctcaaagtctggaagctattgtcgattcacttatatgtgaa
aagcattcaaaattgctgcaaaggcctttggatcttgtttgtaagcgtggaaacattact
cagaaaacatcaaatactgatggtttgacaataataccagagtacgattggaagttattc
tctggggagtggagtgccacacctgaaaaaggtttatctgctgaaattgcttttagcaag
agctctcaagacaaattgcctggggcatctgaagcaacaccaactatggatggtgatcta
gaccaatcacttgatggcgctaatgatgatgtggggggcagagagccctatgtgagaact
gatcctgaggtttgtgaagaatgtattggagaaagagagagctgtgcattggtggagaag
ctcaattaccagaatgaagacatccatgtctatttagtgcgtggaaaagaagcaccaaag
tctgttaaagaagcatctaaatctttcactgtgtcagatcgtcggacctcgaagcgttcc
cgaagaacaaactctggaaattcaatcagtttgaaagtctctggttctacatctgtctat
cagttgaaactcatgatatgggaatctttagggatcgtgaaggagaaccagaagcttcac
aaaggctctgttgagattgaagatgacttggcaactcttgctgacaagagtatttttccc
ggtgatgttctttgggtcagagattctgaaatctatgagaaccgtgacatagcagatgag
atttcagagcagaaggctgatatgctacagacagaggaaggctttcgaggaactctgttg
acatcaagtgtttcagctcagctttgtcaggatgtagcatttagtgaatga
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