Panicum virgatum (switchgrass): 120666397
Help
Entry
120666397 CDS
T07260
Name
(RefSeq) polyprotein of EF-Ts, chloroplastic-like
KO
K02357
elongation factor Ts
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
pvir03012
]
120666397
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120666397
Translation factors [BR:
pvir03012
]
Eukaryotic type
Elongation factors
120666397
Prokaryotic type
120666397
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Mitochondrial translation factors
120666397
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EF_TS
S1
EF-Ts_N
S1_RRP5
UBA_7
DPM3
UBA_8
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
120666397
NCBI-ProteinID:
XP_039802173
LinkDB
All DBs
Position
3N:59325496..59331291
Genome browser
AA seq
995 aa
AA seq
DB search
MTPVIHCSVGNISLFHIGSIRTNREIQIRRLQGSARYSRVASPSPRRLLLPQTAFHLISI
YKRSWSSAQRQRTLSAATVGTNVTVEDQNSSSSGETSDENFEAAPDAVEASEQAEASTDQ
ASSARKLGRNIRKSEMPPLTDEDLVPGASFTGKVRSIKPFGVFVDIGAFTEGLVHISRVS
DGFVKDISSLFTVGQEVSVKLLEANKETGRISLTMREGDDYVKPKKEAPKATTGGRSATA
TPRSSPRQTKERQEAKATSESKYAPGQSLNGTVKSTTRAGTFVTLPDGSEGFLPREEEAV
ALFTLIGQSAMEVGKQIRVKVLNVAQGQATLTMKDVEDDEDDLQTLNTELKRDWSRGTNA
FELAFHRNKEISAFLAQREKTKVPEVQAAAGVAVVEADSSASATETEGKEEVSSSVEAAT
TSVEEAAPVDEESGEELSSVAEVATDIPAPVSEASSQEGIEDSTSVADAADDQTVESGSA
PTIGVELSSNGVPDSTGVSSVSETEDKPDEPEESSAVEVPVTASIGSVEPAAPAEASEKT
GAEVAAAGVEQASTTTATISPSLVKQLREATGAGMMDCKKALAETGGDIEKAQEFLRKKG
LAAADKRAGRATAEGRIGSYIHDSRIGVLIEVNCETDFVSRGDIFKELVDDLAMQVAACP
QVQYISIDDVPEEVVKKETDLEMQREDLLSKPEQIRAKIVEGRVKKRLGEFALFEQPFIK
NDKVTISDWVKQTIATTGENMKVKRFARYNLGEGLEKKSQDFAAEVAAQTTAKPPPSAPP
KEDKLAETTESVEKKPAVAVSAALVKQLRDETGAGMMDCKKALAETGGDLQMAQEFLRKK
GLSSADKKSSRLAAEGLIGSYIHDNRIGCMIEVNSETDFVARNEKFKELVNDLAMQVVAC
PQVDYVSVEDIPESIISKEKDIEMQREDLQSKPENIREKIVEGRIAKRLGVMALLEQPYI
KDDSKTVKDLVKETIASLGENIKVRRFIRYILGED
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgacgccagtgattcattgttctgtcggcaatattagcctgtttcacattggaagtatc
aggaccaaccgagaaatccagataagaagattgcagggctcagctaggtattcgagggta
gcatcaccatcacctcgaagactgttgctgccacaaacagcattccacttgatcagtatt
tacaaaagaagctggtcctcagcccagaggcaaagaaccttgtctgctgcaacggtggga
accaatgtcacagtggaggatcagaattcatcctcttcaggagaaacttccgatgaaaac
tttgaggctgcacctgatgctgttgaagcaagtgagcaggctgaggctagcacggaccaa
gcttcttctgcccgtaaattaggacgcaacatacggaagagtgagatgcctccactgact
gatgaggatctagttcctggtgcatcttttactgggaaggtgaggtctattaaaccattc
ggagtttttgttgacatcggagcattcacggaaggccttgtccatatctcccgagtaagt
gatgggtttgtaaaagatatatcttccctcttcactgttggacaagaggtttcagtaaaa
ttgcttgaagcaaataaggaaacagggcgcatctctcttaccatgcgggaaggtgatgac
tatgtcaagccaaaaaaggaagcacctaaggctacaactggtgggcggagtgccactgcg
actcccagaagctcacctaggcaaacaaaggaaaggcaggaagccaaggcaacaagcgag
tcaaaatatgcaccagggcaatctctgaatggcactgtgaaaagtacaacaagagctggg
acatttgttacactacctgatgggagtgaagggttccttcccagagaagaggaagcagtt
gcattgtttacccttattgggcaatccgcaatggaagttggtaaacaaataagggttaaa
gtattgaatgtagcacaaggtcaggccactttgacaatgaaagacgtggaagatgatgaa
gatgatttgcaaacactgaacacggagcttaagcgtgactggtccagaggaactaatgca
tttgagttggctttccataggaacaaggagatctctgcattcttggctcagagggaaaag
acaaaagtcccggaagtacaagcagctgctggagtagcagtagttgaagctgatagttca
gcttctgcaacagaaactgaaggaaaagaggaggttagctcttccgtagaagctgccacc
actagtgtcgaggaagctgctccggtagatgaggaaagtggtgaagaattgagctctgtg
gctgaagtagcaactgatattcctgcccctgtatctgaggcctcttctcaggagggaatt
gaggattctacttctgtggcagacgctgctgatgaccaaactgtagaatctggaagcgca
cctacaattggtgttgagctgtcctccaatggggtcccagatagcactggtgtgtcttca
gtttcagaaactgaggataaacctgacgagcctgaagaatcttcagccgtagaggttcct
gtaactgcaagtatcgggtcagtggagccagctgcaccagctgaggcaagtgagaaaact
ggtgcagaggttgctgctgctggagtcgaacaagcaagcacaactacagccactatttct
ccttcccttgtgaagcaattgcgtgaagcaactggagcaggcatgatggactgcaaaaag
gctcttgcagaaacagggggtgacattgagaaagcgcaagaattcctacgaaagaaaggg
ttggcagctgctgacaagagggccggcagagcgactgctgagggaagaattggttcttac
atacatgacagcaggatcggggtccttattgaagtgaattgtgagaccgactttgtatcc
cgaggtgacatcttcaaagagttagttgatgatcttgccatgcaagttgctgcttgccct
caagtgcagtacatctctattgatgacgtccctgaggaggttgtgaagaaggagacagac
ctggagatgcagagggaggacctcttgtcaaaacctgagcagatccgggctaagattgtt
gaaggacgtgtaaagaagaggcttggagaatttgcgttgttcgaacagccattcataaag
aatgacaaggtcacaataagtgattgggtgaagcaaaccatagctacaactggagagaac
atgaaggttaagagatttgcccggtacaatctcggtgaagggttggagaagaaaagtcag
gattttgctgctgaagttgcagcgcagacaacagcgaagccaccaccatctgctcctcca
aaggaggacaagcttgctgaaacgacagaatctgttgaaaagaagccagctgttgcagtt
tcagctgcattagtaaagcaactccgcgatgaaactggtgctggtatgatggactgcaag
aaagcgctggctgagaccggtggtgaccttcagatggctcaggagttcctgaggaagaag
ggtctctcatctgcagacaagaaatcatctcgcctagctgctgaaggcctaataggctcc
tacattcatgacaaccgtatcggatgcatgattgaggtcaactccgagactgattttgtt
gctcgcaacgagaagttcaaggagcttgtgaatgacctcgcaatgcaagtggtggcctgc
ccacaggttgactatgtctcggtggaggacatcccagagagcatcatcagcaaggaaaag
gatattgagatgcagagggaagacctgcagtccaaacctgagaacatcagggagaagatt
gtcgaagggcggatagcaaagaggctcggggtgatggccctcctggagcagccctatatc
aaggatgacagcaaaacggtgaaggatcttgtaaaggagacgattgcctccctcggggag
aacatcaaggtgcggaggtttatccggtacatccttggcgaggattga
DBGET
integrated database retrieval system
