Panicum virgatum (switchgrass): 120666419
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Entry
120666419 CDS
T07260
Name
(RefSeq) F-box/LRR-repeat protein 3-like
KO
K10268
F-box and leucine-rich repeat protein 2/20
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120666419
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
120666419
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LRR_6
LRR_At5g56370
LRR_4
LRR_NXF1-5
LRR_14
LRR_At1g61320_AtMIF1
F-box_5
LAMTOR5
Motif
Other DBs
NCBI-GeneID:
120666419
NCBI-ProteinID:
XP_039802198
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All DBs
Position
3N:60023710..60027722
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AA seq
663 aa
AA seq
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MSREGQKLDCAAGAGGVGIGVLSLDLLGQVLDRLREPRDRKACRVVSRAFERAEAAHRRA
LRVLRRERLPRLLRAFPALERLDLSACASLDDASLAAAVAGAGGGLAGLRRVCLARASGV
GWRGLEALVAACPRLEAVDLSHCVGAGDREVAAVAAAAGLRDLRLDKCLAVTDMGLAKVA
VGCPRLEKLSVKWCREISDIGIDLLAKKCPELRSLNISYLKVGNESLRSISTLEKLEELA
MVGCSCIDDEGLELLSKGSDSLQSVDVSRCDHVTYQGLASLIDGRKFLQKLHAADCLHEI
GQCFLSKLSTLKETLTVLKLDGLGVSDSLLQAFGEGCNNLVEIGLSKCSGVTDEGISSLL
ARCSDLKTINLTCCNLITNNALNSIADNCKMLECLLLESCSLINEKGIKQIATCCPNLKE
IDLTDCGVNDAALEYLAKCSELRILKLGLCSSISDKGIAFISSNCGKLVELDLYRCNSFT
DDGLAALANGCKKIKLLNLCYCNKITDSGLGHLGSLEELTNLELRCLVRITCIGISSIAI
GCKSLIELDLKRCYSVDDASLGALARNALNLRQLTISYCQVTGLGLCHLLSSLRCLQDIK
MVHLSWVSIEGFEMALRAACGRLKKLKMLTGLKTVLSPELLQMLQACGCRIRWVNKPLVY
KDC
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgagccgggaggggcagaagctcgactgcgccgccggcgccggcggcgtcgggatcggg
gtgctgtcgctggacctgctgggccaggtgctcgaccgcctgcgcgagccgcgggaccgc
aaggcgtgccgcgtcgtcagccgcgccttcgagcgcgccgaggccgcgcaccgccgcgcg
ctgcgggtgctccggcgggagcgcctcccgcgcctgctccgcgcgttcccggcgctcgag
cgcctcgacctctccgcctgcgcctcgctcgacgacgcctcgctcgccgcggccgtcgcc
ggcgccggagggggcctcgcggggctccgccgcgtgtgcctggcccgggccagcggggtc
gggtggcgcgggctcgaggcgctcgtcgccgcatgtcccaggctggaggccgtcgacctg
tcgcactgcgtcggcgccggggaccgcgaggtcgcggcggtggcggccgcggccgggctc
agggacctcaggctggacaagtgcctcgctgtcacggacatggggctcgccaaggtggct
gtcgggtgccccaggctggagaagctcagtgtcaagtggtgccgtgagatttctgacatc
ggaattgatctgctcgccaagaaatgccccgagctccgcagcctcaacatctcctacctc
aaggtgggtaatgaatcccttagatcaatatctacacttgagaagctcgaggagttggca
atggttggttgctcatgtatagatgatgaaggcctggaattactgagcaaggggagcgac
tcactgcagagtgttgatgtgtcaagatgtgatcatgtgacttaccagggattagcttca
ctcatagatggtcgcaaatttctccagaagttacatgctgcagattgtttgcatgagata
ggacagtgttttctgtccaagttgtcaacactgaaggaaaccttgactgtgttgaaactc
gatggtcttggagtctcagactctctccttcaagcctttggtgaaggttgtaacaacctg
gttgagattggacttagcaaatgcagtggcgttacagatgaaggaatctcatctcttcta
gctcgatgtagtgacctaaagacaattaatctcacatgctgcaatctcatcaccaataat
gcgcttaattcaatagcggacaactgtaagatgcttgaatgcttgctgttagaatcctgc
tctttgataaatgagaagggaataaagcaaattgcaacttgttgccccaatcttaaggag
atagacctcactgactgtggagtgaatgatgcagcgctggagtacttggctaaatgttct
gaactgcgaatattgaaattaggcctatgctcaagtatttccgacaaaggcattgctttt
attagttcaaactgtggcaagctcgtggagcttgacctctaccggtgcaactcctttact
gatgatgggctggcagctttagcaaatggctgcaagaagattaagttgttaaacttgtgc
tactgcaacaagattactgatagtggtttgggccacttaggctctctggaggagcttaca
aatcttgagctgaggtgcttggtccgcatcacgtgcatagggatctcgtcgattgcaatc
ggatgcaagagcctgatagaactggatttgaaacgttgctattcggttgacgatgctagt
ctgggggcccttgctcgtaatgctttgaaccttagacagcttaccatatcatactgccaa
gtcaccggcttgggcctgtgccacctgctgagctccctgcggtgcctccaggacattaag
atggtgcacctctcgtgggtctccatagaagggtttgagatggcgctgcgagcggcctgt
gggaggctgaagaagctgaagatgctcaccgggttgaagaccgtgctgtccccggagctc
ctccagatgctgcaggcgtgcggctgccgaataagatgggtcaacaagcctcttgtctac
aaggactgctga
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