Panicum virgatum (switchgrass): 120666582
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Entry
120666582 CDS
T07260
Name
(RefSeq) heparanase-like protein 2
KO
K07964
heparanase [EC:
3.2.1.166
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00531
Glycosaminoglycan degradation
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00531 Glycosaminoglycan degradation
120666582
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pvir00536
]
120666582
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.166 heparanase
120666582
Glycosaminoglycan binding proteins [BR:
pvir00536
]
Heparan sulfate / Heparin
Enzymes
120666582
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_hydro_79n
Motif
Other DBs
NCBI-GeneID:
120666582
NCBI-ProteinID:
XP_039802391
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All DBs
Position
3N:63305728..63309736
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AA seq
540 aa
AA seq
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MSLWFIFLFSLLCLAARIRSEDYSDVTVIVRGSETIASTSDEFICATMDWWPPEKCNYDQ
CPWGMASVLNLDLTNPLLAKAIQAFSPLRIRVGGSLQDQVLYGTPNLGSPCDPFTKVSGS
LFGFSQGCITLERWDAINDLFLNTGAVVTFGLNALQGRRQISRSVWGGPWDSSNAREFME
YTVSMNYPIDSWEFGNELSGSGIGASVGAEQYGKDLVELQTIINELYGDSRKPLVVAPGG
FYDQKWFAQLLKVSGPNVLSAMTHHIYNLGAGNDPQVPNRILNPQYLSRTSDTFRSLQLT
IQRHGPWSSPWVGEAGGTYNSGSRLVSNTFLNSFWYLDQLGQSAKYDTKVYCRQSLIGGN
YGLLDTDTFVPNPDYYSALLWHRLMGTGVLSTDISGSPYLRAYVHCGKQKGGVTLLLLNL
HRSMGFMVSVRNDLNVNLEEGQGIRRDNVFVHGLKRTVSWVGSKASDGYSKREEYHLSGK
DGDPFARTMLLNGVPLELTEDGDIPPLYPVEVSVNSPIYVAPLTIAFVVFPDFEAEACGR
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgtggttcatctttctcttttctcttctctgtctggctgcacggattcgatca
gaggattactccgatgtgactgtaattgttcgaggctctgagacgattgcttcaaccagt
gatgagtttatctgcgccaccatggattggtggcccccagagaagtgtaactatgaccaa
tgtccatggggaatggcctctgtcttaaatttggacttgactaatcctttgttggctaaa
gctattcaagcctttagcccactgcgaatcagagtgggaggctccttgcaagatcaggtg
ctatatggcacaccaaatttgggatctccatgcgatccatttacaaaggtttcaggcagt
ctgtttgggttttctcaaggatgcataaccttggaaagatgggatgctattaatgatctg
ttcctgaatacaggggcagtagttacatttggtcttaatgcacttcaaggacgacggcag
ataagcagaagtgtttggggaggtccttgggattcgagcaatgctcgagagttcatggaa
tacacagtttcaatgaactatcccatagattcttgggaatttggtaatgaattgagtgga
agtggaatcggtgcgagtgtgggagctgaacaatatggaaaggacctagttgaactccaa
acaatcatcaacgagttatatggagattccaggaaaccactggttgtagcaccaggagga
ttttatgaccaaaaatggtttgctcaactgcttaaggtctctgggccaaatgttcttagt
gcaatgactcatcatatttacaaccttggtgctggtaacgatccacaagttccaaataga
attttgaacccacaatatttgagccggacttccgacacattcagaagtctccaactcaca
atacaacgccatggaccatggtcttctccatgggttggggaagctggtgggacatataac
agcggcagccgtctcgtgtctaatactttcctgaatagcttctggtatcttgatcaactt
gggcaatcagcaaagtatgacaccaaggtttactgcagacagtcgctgatcggtggcaat
tacgggcttcttgacactgacactttcgtaccaaacccggattactacagtgccttgctg
tggcatcggctcatggggacgggagttctttccacagacatcagtggttctccatacttg
cgtgcttatgttcattgcgggaagcaaaaggggggcgtcacactcctcttgttgaacctg
caccgaagcatgggattcatggtttcagtcaggaacgacctcaatgtcaatctcgaagag
gggcaagggatcagaagggacaatgtgtttgtccatggccttaaaaggacagtttcttgg
gtcgggagcaaagcttcagacgggtattccaagagggaagagtaccatctctcggggaaa
gatggggacccctttgcccggaccatgctcctgaacggagttcctctagaactcactgaa
gatggtgacatccctccattgtatcctgtggaagtttcggtcaattcaccaatctatgtt
gctcctctgaccattgcgttcgtcgtgttcccagactttgaggctgaagcttgtggtcga
tga
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