Panicum virgatum (switchgrass): 120666690
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Entry
120666690 CDS
T07260
Name
(RefSeq) la-related protein 6B-like
KO
K15191
La-related protein 7
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120666690
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
7SK RNP complex
120666690
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Ortholog
Paralog
GFIT
Motif
Pfam:
La
RRM_1
PAM2
FXMRP1_C_core
API5
U_exon
DUF5320
Gemini_AL2
Motif
Other DBs
NCBI-GeneID:
120666690
NCBI-ProteinID:
XP_039802531
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All DBs
Position
3N:complement(4371507..4376512)
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AA seq
489 aa
AA seq
DB search
MPYMVGAADQIAAGSAAERPAGLPRSGSSSRLNAQAPEFVPRGPPSPAPAVVVPPPPPQV
IRVFAAPPPPPRAAFFAAPPPRPFEYFAPVGGRAGFTTKEQQVPKPEPDVELIPPAAQAE
PVVDGLQDEVVHKITKQVEYYFSDINLATTEHLMRFISKDPEGYVPISVIAGFKKVKVSV
RNNSMLAAALRASSKLVVSDDGKRVKRQEPFTESDLLELKSRIVVAENLPGDPSYQNLKK
LFSAVGSVISIRTCYPQAPNGSGPATNRSAKLDMLFSNKLHAFVEYETPEDAEKAIVALS
DEENWRNGLRVRLLNTCSAKGTGKGKKEAHESNGNGEEDVSISNQSNEQQSEESSQLLDV
LPEHLFDETFNEKEVPKRGRGRGRGGRGRGRGNHQYNNHHQYNNQHYQNHQPHYNHHSSN
NHGGNRGGAHPVGTPPHNLINKPEQHQQLLIGASKLPPGPRMPDGTRGFTMGRGKPQAVL
PGLCAVGEP
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgccgtatatggtgggggccgccgaccagatcgccgccggctcggcggccgagcggccg
gcgggcctgccgaggagcggctcgtccagccgcctcaacgcgcaggcgccggagttcgtg
ccacggggcccgccgtcgccggcgcccgcggtcgtcgtgccaccgccaccgccgcaggtg
atccgagtgttcgccgcgccgcctccgccgccgcgcgccgccttcttcgcggcgcccccg
ccccggccgttcgagtacttcgcgccggtggggggacgcgccggatttaccaccaaggag
cagcaggtgcccaagccagagccggatgtggagctgatcccgcccgcggcgcaggcggag
ccggtggtggacgggctccaggatgaggtggtgcacaagatcaccaagcaggtggagtac
tattttagtgatataaacctggctaccacagaacatttgatgagattcatcagcaaagat
cctgagggatatgtgccaatatcagttattgctggcttcaagaaagtaaaagtttctgtg
cgtaataactccatgcttgctgcagctctccgagcctcatcaaaacttgttgtaagtgat
gatggaaaaagggtcaaacgtcaagaaccatttactgaatctgatttgctggagctcaag
tcccgaattgttgttgcagaaaatcttcctggtgatccttcctaccagaatcttaagaag
ttattttcagctgttggcagtgtgatttcaattcgcacttgctatcctcaggctccaaat
ggctctggtcctgcaactaatagatctgccaagctagatatgctttttagtaacaagctg
catgctttcgtggagtatgagacacctgaggatgctgagaaggcaattgtggcacttagt
gatgaggaaaactggagaaatggacttagagtccgcttgctgaatacttgctcggcaaag
gggacaggcaaaggcaaaaaggaagcacatgaatctaatggaaatggtgaggaagatgtc
tccatttcgaaccaatcaaatgagcaacagtctgaagaatcctctcaactgttagatgtg
ttgccagagcacttgtttgacgagaccttcaatgagaaggaagttccaaaacgtggcaga
ggacgcggtcgaggtggcagggggcgtgggcgtggcaaccaccagtacaacaatcatcac
cagtacaacaaccagcactaccagaaccaccagccgcactacaatcaccacagcagcaac
aaccacggcggcaaccgtggtggtgcccacccggttggaactccgccgcacaacctgata
aacaagcccgagcagcaccagcagctgctgatcggggccagcaagcttcctccgggcccc
cgcatgcctgatggtacacggggtttcaccatgggcagagggaagccacaagctgtgctg
ccaggtctgtgtgctgttggcgagccttaa
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