Panicum virgatum (switchgrass): 120666810
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Entry
120666810 CDS
T07260
Name
(RefSeq) probable diaminopimelate decarboxylase, chloroplastic
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00300
Lysine biosynthesis
pvir00470
D-Amino acid metabolism
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
pvir01230
Biosynthesis of amino acids
Module
pvir_M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
120666810
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
120666810
Enzymes [BR:
pvir01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
120666810
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Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-GeneID:
120666810
NCBI-ProteinID:
XP_039802691
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Position
3N:65469348..65477186
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AA seq
497 aa
AA seq
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MAAANLLSRSLLPALNPSPSARRNRGSAAAAASFPRPRCLHGRLSSVRASVSTATPSPPP
QPAAAAAAAAAAAPKHCFSRGADGYLYCEGVRVEDAMAAAARSPFYLYSKPQVLRNFAAY
REALQGLRSVVGYAVKANNNLPVLRLLRELGCGAVLVSGNELRLALQAGFEPTRCIFNGN
GKTLEDLMLAAESGVFVNVDSEFDLENIVRAARATGKRVPVLLRINPDVDPQVHPYVATG
NKTSKFGIRNEKLQWFLDSIKSYSNDMKLVGVHCHLGSTITKVDIFRDAAVLMVNFVDEI
RAQGFELEYLNIGGGLGIDYHHTDAVLPTPMDLINTVRELVLSRDLTLIIEPGRSLIANT
CCFVNRVTGVKSNGTKNFIVVDGSMAELIRPSLYGAYQHIELVSPPSPGAEVATFDIVGP
VCESADFLGKDRELPTPDEGAGLVVHDAGAYCMSMASTYNLKLRPPEYWVEEDGSIVKIR
HQEKLDDYMKFFDGLPA
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgaacctgctctcgcgctccctcctccccgccctaaaccctagcccgtcc
gcccgccggaaccgcggcagcgccgccgccgccgcctccttcccccggccccgctgtctc
cacggccgcctgtcctccgtgcgcgcctccgtctccacggccaccccttccccgccgccg
cagcctgcggcggcggcggcggcggcggcggcggccgcgccgaagcactgcttcagccgc
ggcgccgacgggtacctgtactgcgagggggttcgggtggaggacgcgatggcggcggcg
gcgcggagccccttctacctctacagcaagccgcaggtcctccgcaacttcgccgcctac
cgcgaggcactgcaggggctccgctccgtcgtggggtacgccgtcaaggccaacaacaac
ctccccgtgctgcgcctcctgcgcgagctcggctgcggcgccgtgctcgtcagtggcaac
gagctccgcctcgcgctccaagcgggtttcgaaccgaccaggtgtatatttaacggaaat
gggaagacattggaagatctcatgttagctgctgagagcggggtatttgtaaatgtggac
agcgaatttgatttggagaatattgtcagagctgcaagggctacaggaaagagagtgcct
gttttgcttagaataaatccagatgtggatccgcaggtacatccgtatgttgccactgga
aataaaacatccaaattcgggatccgcaatgagaaattgcaatggtttctggactctatc
aagtcatactcgaatgatatgaagttggttggtgttcattgtcatctggggtctactatt
acaaaggttgatatattcagagatgctgcagttcttatggtaaattttgttgatgaaatt
cgagcacaaggttttgagttggagtacctgaacatcggaggtggtttgggaatagattac
caccacaccgatgcagtcttgcctacacctatggatctcatcaacactgtgcgagaatta
gttctctctcgagatcttactcttatcattgaacctggaagatccttgattgctaatact
tgctgcttcgtcaatagagtaactggtgttaaatctaacggtacaaagaattttattgtt
gttgatggcagcatggcagaactcatcagacctagtctgtatggagcataccagcatatc
gaactggtctctcccccctctcctggtgccgaagtagctacctttgatattgtcggacca
gtttgtgagtctgcagatttccttggaaaagatagggagcttccaacacctgatgaggga
gctggactggttgttcatgatgcaggtgcctactgcatgagcatggcttccacctacaac
ctgaagttgagaccgccagagtactgggtggaagaggacggttctatcgtaaagatcaga
catcaagagaagcttgatgactacatgaagttctttgatggtcttccagcttag
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