Panicum virgatum (switchgrass): 120666901
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Entry
120666901 CDS
T07260
Name
(RefSeq) septin and tuftelin-interacting protein 1 homolog 1-like
KO
K13103
tuftelin-interacting protein 11
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120666901
Spliceosome [BR:
pvir03041
]
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
120666901
Other components
Complex C specific factors
120666901
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GCFC
TIP_N
G-patch
G-patch_2
Motif
Other DBs
NCBI-GeneID:
120666901
NCBI-ProteinID:
XP_039802821
LinkDB
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Position
3N:66860867..66863896
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AA seq
844 aa
AA seq
DB search
MAEEAEGMDRFDMEGDFEGGRFGRDGEFYYRSRRERAPQTRDDAIYGVFAEGDSDYDSED
DEGSRRRGRRKRRRDGGGEPDLTKPVQFVSTGKFMPTQEPEPEPDQRPGLGRAPAAAAAK
EEEAEEEQDDEGDTEMLPTMFGRIRDGARARREEKEREREKAARRRQAAGVGAVEPAAAL
GSLEANSKVAKMMAMMGYKKGMGLGKNEQGRTAPVETTLRPKNAGLGSVEGFKEPKPMTA
KENLPAPAPPPTSGKKEKRWSKKASTKKAPVLTKNELLAMHAEQQQEEEPAVVQKVIDMR
GPQARVLTDLKGLNEEQEMEANDVPMPELQYNVRLLVDEARADVLRLDGQLQREREKVAS
LVREKEKVAKQEALQKRQLQVMERIAETLEQVRVDDTAGMLTLDGLLQTFHGLKVQFEEE
FKMCSIAWIACRYAHPLLIRIFQGWQPLQDPKFGLDVMKKWKDLLQGDQPYDLSDGSASM
TPYVQLVSEVILPAVRISGTNSWEAREPEPMLNFLELWDNKKLLPPVLLQSILEHVIMPK
LSTAVDSWDPRRESVPIHVWVHPWLPMLRERIETLCHSIRYKLSTVLHVWQAHDASAYAV
LSPWKDVFDSASWEDLIVRYIIPKLRLALQEFQINPANQKLDQFNWVMLWASAIPVHIMV
HMLEVDFFSKWQQVLYHWLCSPNPDFNEIMNWYKGWKSLFPPELLANERIRMLLTAGLDM
MNQAAEGLEVVQPGARENVGYLRATEKRQFDAAQQAYHAAPGAAMADLSFKESIQAYAME
QGLLFMPRVGKFYNGMPVYEFGTVSICIDSVKRLLYAQLQEGIERWSAVTLTQLMEMNRM
GRSR
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggaggcggaggggatggaccggttcgacatggaaggggacttcgagggcggg
cggttcggccgcgacggggagttctactaccggagccggagggagcgggcgccgcagacc
cgcgatgacgcgatatacggggtgttcgcggagggcgactccgactacgactcggaggac
gacgaggggtcccgccgccgcggccgccggaagcgccgcagggacggcggcggggagccg
gacctcaccaagcccgtccagttcgtctccaccggcaagttcatgcccacccaggagccg
gagcccgagcccgaccagaggccggggctcgggcgcgcccccgcggctgctgctgccaag
gaggaggaggcggaggaggagcaggatgacgagggggacaccgagatgctgccgacgatg
ttcggcaggatcagggatggcgcccgcgcgaggcgggaggagaaggagcgggagcgcgag
aaggcagcgcgccgccgccaggcagccggggtgggggcggtggagccggcagcggccctt
gggagcctggaggctaattccaaggtggccaagatgatggccatgatggggtacaagaaa
ggaatgggccttggaaagaatgagcaggggaggacagcgccggtggagaccactttgcga
cccaagaacgctggcctggggagtgtggagggtttcaaggaacccaagcccatgactgct
aaggagaacttgccggccccggctcctccgccaacatcagggaagaaggagaagcgttgg
tccaagaaggctagcacaaagaaagctccagtcttgacgaagaatgagctcctggccatg
catgccgagcagcaacaggaggaggagcctgcagttgtccagaaggtgattgacatgcga
gggccccaggcacgggtgctgacggacttgaagggtctcaatgaagaacaagagatggag
gcgaatgatgtgccaatgccggagctgcagtataatgtgcgcctgcttgttgatgaggct
agggctgatgttctgaggttggatgggcagctgcaaagggagcgggagaaggtagctagc
ttggtgcgggagaaggaaaaggtggccaagcaggaggcattgcagaaacgccagctgcag
gtgatggagagaattgcagagacactggagcaggtccgggtggatgatacagctggcatg
ctcactctggatgggttgcttcagacattccatggcttgaaggtgcagtttgaggaggag
tttaagatgtgcagcattgcatggattgcttgcagatatgctcatccgctgctaatccgg
atcttccagggatggcagcccctgcaggatccgaagtttgggttagatgtcatgaaaaag
tggaaggacctgctgcagggggaccaaccatatgacttatcagatggttctgcatcaatg
acaccatatgtgcagcttgttagtgaagtcatcctgccggctgtgaggatatcaggaacc
aattcatgggaggctagggaaccggaaccaatgctcaactttcttgagttatgggataat
aagaagttgcttcctcctgttttgcttcaatcaatactagagcatgtgataatgccaaag
ctctcaactgctgtggattcatgggaccctcgcagggagagtgtaccgatccatgtctgg
gtacacccatggttgccaatgctaagggaaaggatagagaccttgtgccattctattcga
tacaagctgagcactgtcctccacgtgtggcaagcacatgatgcttcggcgtatgctgtg
ttgtccccgtggaaggatgtgtttgattcggcaagctgggaagacctgattgtgcggtat
atcattcctaaactgagattggcactgcaagagtttcagatcaacccagcaaaccagaaa
cttgatcagttcaactgggtgatgttgtgggcatctgcaatcccagtacacatcatggtc
catatgttggaggttgatttcttcagtaagtggcagcaggtcctataccattggttgtgc
tcgccaaatcctgatttcaatgagataatgaactggtataagggctggaagagccttttc
ccaccagagttacttgccaatgagcgcatacggatgcttctaaccgctggtcttgacatg
atgaaccaagctgctgaaggactagaggtggtgcaacctggggctagggagaatgtgggc
tacttgagagcaactgagaagcgacaatttgatgcagcacagcaggcttaccatgctgca
ccaggggcagccatggcggatttgagctttaaggaatctatccaggcctatgcaatggag
caagggctgctgtttatgcctagagttggcaagttctacaatggcatgccggtgtatgag
tttggcaccgttagcatttgcatagactctgtgaagcgactattgtatgcgcaacttcaa
gagggaattgagagatggagtgctgtaactcttacacaattgatggaaatgaaccgaatg
ggaagatcacgctaa
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