KEGG   Panicum virgatum (switchgrass): 120667084
Entry
120667084         CDS       T07260                                 
Name
(RefSeq) E3 ubiquitin-protein ligase RNF185-like
  KO
K10666  E3 ubiquitin-protein ligase RNF5/185 [EC:2.3.2.27]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    120667084
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pvir04121]
    120667084
Enzymes [BR:pvir01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     120667084
Ubiquitin system [BR:pvir04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    120667084
SSDB
Motif
Pfam: zf-C3HC4 zf-RING_2 zf-C3HC4_2 zf-C3HC4_3 zf-RING_5 zf-RING_UBOX RING_XB3-XBAT31 zf-C3HC4_4 zf-ANAPC11 Baculo_IE-1 zf-RING_10 Prok-RING_4 TRAF3_RING DUF7937 zf-C2H2_AcuF Sina_RING zf-LITAF-like
Other DBs
NCBI-GeneID: 120667084
NCBI-ProteinID: XP_039803040
LinkDB
Position
3N:69342098..69345498
AA seq 227 aa
MAANVGESTSGSSSGADAGGSFECNICFELPQEPIVTLCGHLFCWPCLYKWLRIHSHSPE
CPVCKAVVEEDKLVPLYGRGKDRVDPRSKNVPGADIPNRPAGQRPATAPQADPNNHFPNA
DPNNHFPLANARWGNYTFSAAFGGLFPLLSFQVHGFPDATAYGQPAGFPYGYGHGHGHAF
HGGHAGHAHAAAPRHGPHGQQQQQADVYLKALLILVGFLVIASLITF
NT seq 684 nt   +upstreamnt  +downstreamnt
atggcggcaaatgtcggggaatcgacaagcggcagcagcagcggcgctgatgctgggggt
agctttgagtgcaacatatgctttgagctgccacaggagccgattgtaacgctctgtggc
caccttttctgctggccatgcctttacaaatggctgcgcatccactcgcactcgccagag
tgcccagtgtgcaaggctgttgtcgaggaggataagctcgtccccctgtatggccgtggc
aaggaccgcgtcgacccaaggtcaaagaacgtcccaggggctgacattcccaaccggcca
gctgggcagaggcctgcaactgctccacaggccgatcctaacaaccacttccccaatgcc
gatcctaacaaccacttcccgctggccaatgcacggtgggggaactatacgttctcggct
gcgttcgggggtttgttcccgctgctcagcttccaggtgcatgggttccctgatgcaaca
gcttatggtcagccggctgggttcccttacgggtatgggcacggccatgggcatgcattt
cacggtgggcatgcagggcatgctcacgccgcagctccccggcatggaccgcatgggcag
cagcagcagcaggcggatgtgtacctgaaggcgctgctcatcctggttggatttcttgtg
atcgcaagcctcatcactttctag

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