Panicum virgatum (switchgrass): 120667089
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Entry
120667089 CDS
T07260
Name
(RefSeq) MADS-box transcription factor 58-like isoform X1
KO
K09264
MADS-box transcription factor, plant
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120667089
Transcription factors [BR:
pvir03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
MADS-box regulators of differentiation, Homeotic genes
120667089
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GFIT
Motif
Pfam:
SRF-TF
K-box
GIT_CC
NET2A
VPS51_Exo84_N
RIMB1_N
DUF6262
Motif
Other DBs
NCBI-GeneID:
120667089
NCBI-ProteinID:
XP_039803045
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Position
3N:6406981..6415535
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AA seq
318 aa
AA seq
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MHIQEVQPSTDIMWGFSGQSTLTSTTGPKLKEPAVSSPGSGSVGAAAAAAAAEKNGRGKI
EIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKATI
ERYKKATSDNSSAASTVAEVTIQHYKQESARLRQQITNLQNSNRTLVGDSISTMSHKDLK
QLEARLDKGLVKIRARKVHCDNNHIRCIARKINIYFVCPIHGHLITLQNEVLSSELEYMQ
RREMELQNDNLYLRSRVDENERAQQTANMMGESSTSEYQQGFIPYDPIRSFLQFNITQQQ
PQFYSQQEDRKDFNLGGR
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgcatatccaagaagtgcaaccatccacggacatcatgtgggggttctccgggcagtct
accttgacttcaacgacgggtcctaagctgaaggagccggcggtgtcgtctccgggctca
ggctcggtcggagctgctgctgctgctgctgctgcagagaagaacgggaggggcaagatt
gagatcaagcgcatcgagaacacgaccaaccgtcaggtcaccttctgcaagcgccgcaat
ggactcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgccctcatt
gtcttctccagccgcggccgcctctacgagtactccaacaacagcgtgaaggcaaccatt
gagaggtacaagaaggcaaccagtgacaactccagcgcagctagtacggttgcagaggtc
actatccagcactacaagcaggaatctgctaggctgaggcagcagatcaccaacttgcag
aactccaacaggaccctggtaggtgattctatttcaaccatgagccacaaggaccttaag
cagctagaggctaggttggacaaaggcctggtaaagattagagctagaaaggtacactgt
gataataatcatatacgttgcattgcgaggaaaataaatatttattttgtttgcccgatt
catggccatctcattactctgcagaatgaggtgctatcttctgaactcgagtatatgcag
aggagggaaatggagttgcagaatgataacttgtacttaaggagcagggttgacgagaat
gagagggcacagcagacagcgaacatgatgggggagtcgtcgacgagtgagtaccagcaa
ggtttcattccttatgacccaataagaagcttcctgcagttcaacatcacgcagcagcag
cctcaattttactcccagcaggaggaccggaaagacttcaacctaggtggaagataa
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