Panicum virgatum (switchgrass): 120667107
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Entry
120667107 CDS
T07260
Name
(RefSeq) protein argonaute 1B-like
KO
K11593
eukaryotic translation initiation factor 2C
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120667107
03036 Chromosome and associated proteins [BR:
pvir03036
]
120667107
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120667107
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120667107
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
120667107
microRNA pathway
RISC loading complex
120667107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
Gly-rich_Ago1
PAZ
ArgoL1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
120667107
NCBI-ProteinID:
XP_039803075
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All DBs
Position
3N:complement(6530185..6537881)
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AA seq
1110 aa
AA seq
DB search
MVRKKRTGPGESSGEAPGAPGQGSSQRPETTPQHGGGRGLLPQQGARGGGQHQARGGYQG
RGGPPESQPRDYQGRGGYQGRGGPPSQHPGGPLDAQLRDYQGRGGYQGRGVPPSQHPGGG
PPEYQSQEYQGCGGPRPRGGVPQPHYGGRGGGSVGPSVPPGPSRSVPELHQAPYVQYQPP
VAVSPSPPAAGSSSQPTEAVVSTGQVQQQFQQLAIRGESSTSQAIQMAPASSKSVKFPLR
PGKGTYGSRCIVKANHFFAELPDKDLHHYDVSITPEVTSRGVNRAVMGQLVTLYRQSHLD
GRLPAYDGRKSLYTAGPLPFTSRAFEITLQDEEASPGGGQRRERVFKVVIKFAARADLHH
LAMFLAGRQPDAPQEALQVLDIVLRELPTARYCPVGRSFYSPNLGRRQQLGEGLETWRGF
YQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVAQLLNRDISVRPLSDSDRVKIKKALRGV
KVEVTHRGNMRRKYRISGLTSQATRELSFPIDDRGTVKTVVQYFLETYGFSIQHTSLPCL
QVGNQQRPNYLPMEVCKIVEGQRYSKRLNEKQITALLKVTCQRPQEREKDILQTVHHNAY
FEDPYAQEFGIRIDERLASVEARVLPPPRLKYHDSGREKDVLPRVGQWNMMNKKMVNGGR
VSSWACINFSRNVQDNAARSFCHELAQMCQVSGMDFALQSVLPPSTARPEHVERALKGCY
QDAMNILRPQGRELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKANKQQY
LANVALKINVKVGGRNTVLVDALARRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVA
SQDWPEVTKYAGLVSAQAHRQELIQDLFKVWQDPQRGTVTGGMVRELLISFRRSTGQKPQ
RIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHND
QRSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQ
SLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDTSDSGSMVSGAGASRVPPPG
SSRSSRAVGTAAVRPLPALKENVKRVMFYC
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atggttaggaagaaaagaactggccctggagagagttctggggaggctcctggagcgcct
ggacagggctcctcacagcgacctgagacaactccacagcatgggggaggacgtggttta
ctgcctcaacaaggtgcccgtggtggagggcaacaccaggcccgtggtggatatcagggc
cgtggagggccacctgagtctcaaccgcgcgactaccaggggcgtggtgggtatcagggc
cgtggaggcccaccttcacaacatcctggtgggccacttgatgctcaactgcgtgattac
cagggccgtggtggataccagggccgtggagtcccaccttcacaacatcctggtggtgga
ccacctgagtatcaatcgcaggagtaccagggatgtggtggtccacgccccagaggggga
gtgcctcagccacactacggcgggcgtgggggaggtagtgttggaccaagtgttcctcca
ggtccatcgagatcagttcccgagctgcaccaagccccatatgtccaatatcaaccccct
gtggcggtatcaccatccccaccggcagctggctcttcctcgcagcctacggaggctgtg
gtgagcactggacaagtccagcaacagtttcagcaacttgctattcgtggtgagagttca
accagccaagccattcagatggcaccggcatcaagcaaatcagttaaattcccattgcgc
cctggcaagggtacttatggctccaggtgcatcgtgaaggcaaatcatttctttgctgag
ctgcctgataaagaccttcaccactacgatgtttctattacgcctgaggttacttcacgt
ggcgtcaatcgtgctgtcatgggacagcttgtaactctttatagacagtctcatttggat
gggcgtctacctgcatatgatggaaggaagagcctttatacagcgggaccattgccattt
acatctagggcatttgaaattactctgcaagatgaggaggctagtcctggtggaggccaa
aggcgcgaaagggtatttaaggtggtgatcaaatttgctgcccgcgctgatctccaccat
ctggctatgtttctagctgggaggcaaccagatgctcctcaagaggctcttcaagtactt
gacattgtactacgtgaattgcctactgccaggtattgtcctgttggtagatcattttat
tctcccaacttagggagacgccagcaacttggtgagggtttggaaacttggcggggtttc
taccaaagcataaggcccacacagatgggtctttctctaaatattgatatgtcctctact
gcatttattgagcccctccctgttattgatttcgttgctcagcttcttaacagagacatc
tcagttagaccgttatctgattctgatcgtgtgaagattaaaaaagctctacgaggtgta
aaagtcgaagtcacacaccgagggaacatgcgaaggaaatatcgtatctctggcctcact
tcacaggcaacaagggagttatcattccctattgatgatcgtggtactgtgaagactgtg
gtgcaatacttcctggagacttatggcttcagtattcagcacacttctttgccttgcttg
caagtgggcaatcaacaaagaccaaattatctgcctatggaggtctgtaagatagttgag
ggacagcgttactcaaaacgactcaatgagaagcagatcactgctctactgaaagtgact
tgccagcgtcctcaagagcgtgagaaagacatcctgcagactgtgcatcacaatgcatac
tttgaagatccatatgcacaagaatttggcataaggattgatgagcgtcttgcatccgtc
gaagctcgtgttctgcctcccccaaggctgaaataccatgacagtggcagagagaaggat
gttttgccaagagtcggacagtggaacatgatgaataagaaaatggtcaatggcggtaga
gttagcagctgggcatgcattaacttctcacgcaatgtgcaagataatgctgccaggagt
ttctgtcatgagctggctcagatgtgccaagtatctggaatggactttgcacttcaatct
gtgctaccaccatcgactgcgaggcctgaacatgttgaaagagcactaaagggatgctat
caagatgccatgaacatactcagacctcagggccgagaacttgacctgctgattgtaata
ctgcccgacaataatggctcactttatggggatctcaaaaggatctgtgagactgatctt
ggcttggtctcccaatgttgtctaactaaacatgttttcaaggcgaacaaacagcagtat
cttgcaaatgttgcccttaaaataaatgttaaggttgggggaaggaatactgtgcttgta
gatgctttggcaaggagaattccccttgtcagtgacagaccaaccattatatttggtgct
gatgttacccatccccatcctggagaagattctagtccttccattgcagctgtggttgct
tctcaagactggccggaggtcaccaagtatgcaggattagtgagtgcccaagcccatcgc
caagagttgatacaggatcttttcaaagtatggcaagatccccaaagagggactgtcact
ggtggcatggtcagggaacttctcatttctttcaggaggtcaacaggacagaaaccccag
aggatcatattctacagggatggtgttagcgaggggcagttctatcaagttttgttatat
gagcttgatgccattagaaaggcctgcgcatcgttggagcccaactaccagcctccagtt
acttttgtagtggtccagaagcgtcatcacactagattgtttgctaacaaccacaatgat
cagcgttctgttgatagaagtggaaacatactgcctggcactgtggtggattcaaagatt
tgccatcccactgagtttgatttctacctgtgtagccatgctggcattcagggaacaagc
cgccccgcacattatcatgttctgtgggatgagaataagtttacggctgatgggttacaa
tctctcaccaacaacttgtgctacacgtatgctaggtgcacacgctcagtatcagttgtg
cctcctgcatactatgctcatttggcagccttccgagctcgcttttacatggagccagat
acctctgacagtgggtcgatggtaagcggtgctggagcgagccgtgtccctccacctggg
agttctcgcagctccagggctgttgggactgctgctgtgagacctctacctgccctcaag
gaaaacgtgaagcgtgtcatgttttactgctaa
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