Panicum virgatum (switchgrass): 120667140
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Entry
120667140 CDS
T07260
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB5-like
KO
K10845
TFIIH basal transcription factor complex TTD-A subunit
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
pvir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120667140
09124 Replication and repair
03420 Nucleotide excision repair
120667140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120667140
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120667140
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
120667140
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
120667140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb5
Motif
Other DBs
NCBI-GeneID:
120667140
NCBI-ProteinID:
XP_039803120
LinkDB
All DBs
Position
3N:6890086..6891820
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AA seq
70 aa
AA seq
DB search
MVNAIKGLFISCDIPMAQFIVNLNASMPASERFIVHMLDPTHMFVQPHVVEMIRSKIGEF
RDQNSYEKPQ
NT seq
213 nt
NT seq
+upstream
nt +downstream
nt
atggttaatgcgatcaaggggttgttcatctcctgtgatatacctatggcacagtttatt
gttaatctgaatgcttcaatgccggcatcagagaggttcatcgtgcacatgctcgatcct
acacacatgtttgttcagccccatgtggtagaaatgatcagaagcaagataggggagttc
agggaccagaatagctacgagaagccgcagtga
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