Panicum virgatum (switchgrass): 120667148
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Entry
120667148 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase RDUF2-like
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120667148
04121 Ubiquitin system [BR:
pvir04121
]
120667148
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120667148
Membrane trafficking [BR:
pvir04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
120667148
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120667148
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1117
Zn_ribbon_19
zf-RING_2
zf-rbx1
zf-RING_11
zf-C3HC4_2
zf-ANAPC11
zf-RING_UBOX
zf-C3HC4
zf-RING_5
zf-RING_16
Rad50_zn_hook
zf-HC5HC2H_2
zf-Nse
CxC4
zf-HC5HC2H
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
120667148
NCBI-ProteinID:
XP_039803128
LinkDB
All DBs
Position
3N:6967275..6969425
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AA seq
397 aa
AA seq
DB search
MASSPTAAPGASYWCYQCDRFVRAAPQQEGGGGDSPSAAVACPACGGGFLEEMGAPPPRA
AYLRRPRAHHHHAAAAADLRLRRARRGGGGGAGADTRASPFNPVIVLRRSPAGGDADDVA
AAASSFELFYDDGAGSGLRPLPESMSDFLMGSGFERLLDQLAQIEAGGLARARDNPPASK
AAVESMPVVAVDAARVAADSHCAVCKEPFELGAEAREMPCSHIYHADCILPWLALRNSCP
VCRHEMPTDAPRAGARAAGEGSEEEATVGLTIWRLPGGGFAVGRFAGGRRPEERELPVVY
TEMDGGFNNGGAPRRISWVSRQSPSTERGAIRRILRSVFACFGRGHSSSRASSSQSHAMP
ELNDAASDRSASFSHGSRSRSTSWRLEDGHADAMVQR
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgtcccccacggcggcccccggggcgtcctactggtgctaccagtgcgaccgc
ttcgtccgtgccgcgccgcagcaggagggcggcggcggcgactccccgtccgccgccgtc
gcctgcccggcctgcggcggcggcttcctcgaggagatgggcgcgcccccgccgcgggcc
gcctacctccgccgcccgcgcgcgcaccaccaccacgccgcggcggccgccgacctgcgc
ctccgccgcgcccgccgcggcgggggcggcggcgccggggccgacacccgcgcctcgccc
ttcaaccccgtcatcgtgctccgccgctcccctgccggaggggacgcggacgacgtcgcc
gccgcagccagcagcttcgagctcttctacgacgacggcgcaggctcgggcctccgcccg
ctccccgagagcatgtccgacttcctcatgggctcggggttcgagcgcctcctcgaccag
ctcgcgcagatcgaggccggcggcctcgcccgcgcgcgcgacaacccgccggcctccaag
gccgccgtcgagtccatgcccgtcgtcgccgtcgacgccgcgcgcgtcgccgccgactcc
cactgcgccgtctgcaaggagcccttcgagctcggcgccgaggcgcgcgagatgccctgc
agccacatctaccacgccgactgcatcctgccctggctcgcgctccgcaactcctgcccg
gtctgccgccacgagatgcccaccgacgcgccgcgcgcaggggcgcgggccgccggcgag
ggctccgaggaggaggccaccgtcggcctcaccatctggaggctccccggcggcggcttc
gcggtcgggaggttcgccggcgggaggaggcccgaggagagggagctccccgtcgtgtac
acggagatggacggcggattcaacaacggcggcgcgccaaggaggatctcctgggtgtca
aggcagagcccctccacggagaggggagccatcaggcgcatcctgcgcagcgtcttcgcc
tgcttcgggcgcggccactcttcttcgcgggcctcgtcctcccaatcacacgcgatgccg
gagctcaacgatgcggcgtccgaccggagcgccagcttcagccatgggtcaaggagccgg
agcacgagctggcggctcgaggacggccacgccgatgccatggtgcagagatga
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