KEGG   Panicum virgatum (switchgrass): 120667164
Entry
120667164         CDS       T07260                                 
Name
(RefSeq) protein SLOW WALKER 1-like
  KO
K14549  U3 small nucleolar RNA-associated protein 15
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    120667164
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pvir03009]
    120667164
Ribosome biogenesis [BR:pvir03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    120667164
SSDB
Motif
Pfam: UTP15_C WD40 WD40_Prp19 WDR55 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 Beta-prop_WDR75_1st Beta-prop_EML WD_LRWD1 Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Utp13
Other DBs
NCBI-GeneID: 120667164
NCBI-ProteinID: XP_039803155
LinkDB
Position
2K:complement(12615530..12617460)
AA seq 537 aa
MAADTSKPFFPTAPNQALLPSRGAAARASLDGSYWRAFRSSELVSGADFPVTDLTFAPAA
AASPTLAAAWSTSLHLFSGDPLQPLRRISVAGDLAFSPSFRCDGALLAAGDKRGVVRVFR
ADKPAAGAALRTLRAHAAETRVVRYPVAGGDKLHLFTAGDDALLTYWDVPSETPVFSVPA
AHRDYIRGGAASPADHNLFSTGSYDRSVKLWDARTGNTGPSLSFSHGELVESVLFLPSGG
LLATAGGNVVKIWDVIGGGRLVHSVESHVKTVMALALGKMANATGETRLLSAGIDGYVKI
FDFGKLKMTHSLRHPQPLLSVACSPCGTVLVAGSAKGKIYMGKRKKKAVDGEDEGKKAGS
GEIDWVSPKPEKPVLRPNYYRYFLRGQNEKAKEGDFVIEKPKKVKVAEHDKLLRKFRHKD
ALVSALVKNNPRSAVAVMEELVARRKLVRCIWNLDTEELGLLLEFLRRNATLPRYARFLL
GVANKVLEMREEDIRSDEKLRMHIRNLKRMVGEEIQIQHTLQGIQGMISPMLALATR
NT seq 1614 nt   +upstreamnt  +downstreamnt
atggccgccgacacctcgaagccgttcttccccacggcgccgaaccaggctctcctcccc
tcccgtggcgccgccgcgcgggcctccctggacggctcctattggcgcgccttccgctcc
tccgagctcgtctccggcgccgacttccccgtcaccgacctcaccttcgccccggccgcc
gccgcctccccgaccctcgccgccgcgtggtccacctccctgcacctcttctccggcgac
ccgctccagccgctccgccggatctccgtcgccggcgacctcgccttctccccctccttc
cgctgcgacggcgccctcctcgccgccggcgacaagaggggcgtcgtccgcgtcttccgc
gccgacaagcccgcggcgggcgccgccctccgcacgctgcgcgcccacgccgccgagacc
cgtgtcgtccggtacccggtcgccggcggggacaagctccacctcttcaccgccggggac
gacgcgctcctcacctactgggacgtgccctcggagacgccggtcttctccgtccccgcc
gcgcaccgggactacatccgcggcggcgcggcctcccccgccgaccataacctcttctcc
acgggctcctacgaccgcagcgtcaaattgtgggatgcccgcacggggaacacaggcccg
tctttgtccttctcccatggggaactggtcgagagcgtgctgttcctgccgtccggcggg
ctgctggccacggctggagggaacgtggtcaagatttgggacgtcattggcggcggccgg
ctcgtgcactctgtggagagccatgtcaagacagtgatggcgctggcgcttgggaagatg
gccaacgccaccggggagacgcggctgcttagtgcgggcattgatgggtatgtgaagatc
tttgattttggcaagcttaagatgacacattcattgcggcacccacagccgctcctgtct
gttgcttgctcgccctgcggcactgtcctggtggctgggtctgcaaaagggaagatttat
atgggcaagaggaagaagaaggctgtggatggggaggatgaagggaagaaggctggcagt
ggtgagattgactgggtatcgccgaagccagagaagccagtgttgaggccaaattactac
aggtacttcctccgtggacagaatgagaaggccaaagagggtgactttgtgattgagaag
cctaagaaggtgaaagttgcagagcatgataagttgctgagaaagttcaggcacaaggat
gctctagtttcagcattggttaaaaacaaccccagaagcgctgtggctgtgatggaggag
ctagttgcaaggagaaagctggtgagatgcatttggaatttggatacagaggaacttggg
cttctgcttgagttccttcgccggaacgcgacattgccaaggtatgcaaggttcttgttg
ggtgtggcaaacaaggtactggagatgcgagaggaggatatccgatctgatgagaagctg
aggatgcacattagaaatctcaagagaatggttggagaagaaatccagatacaacacaca
ttgcaggggattcaaggaatgatatcgcccatgcttgcacttgccaccagatga

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