Panicum virgatum (switchgrass): 120667164
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Entry
120667164 CDS
T07260
Name
(RefSeq) protein SLOW WALKER 1-like
KO
K14549
U3 small nucleolar RNA-associated protein 15
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120667164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120667164
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
120667164
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP15_C
WD40
WD40_Prp19
WDR55
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_EML
WD_LRWD1
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Utp13
Motif
Other DBs
NCBI-GeneID:
120667164
NCBI-ProteinID:
XP_039803155
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Position
2K:complement(12615530..12617460)
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AA seq
537 aa
AA seq
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MAADTSKPFFPTAPNQALLPSRGAAARASLDGSYWRAFRSSELVSGADFPVTDLTFAPAA
AASPTLAAAWSTSLHLFSGDPLQPLRRISVAGDLAFSPSFRCDGALLAAGDKRGVVRVFR
ADKPAAGAALRTLRAHAAETRVVRYPVAGGDKLHLFTAGDDALLTYWDVPSETPVFSVPA
AHRDYIRGGAASPADHNLFSTGSYDRSVKLWDARTGNTGPSLSFSHGELVESVLFLPSGG
LLATAGGNVVKIWDVIGGGRLVHSVESHVKTVMALALGKMANATGETRLLSAGIDGYVKI
FDFGKLKMTHSLRHPQPLLSVACSPCGTVLVAGSAKGKIYMGKRKKKAVDGEDEGKKAGS
GEIDWVSPKPEKPVLRPNYYRYFLRGQNEKAKEGDFVIEKPKKVKVAEHDKLLRKFRHKD
ALVSALVKNNPRSAVAVMEELVARRKLVRCIWNLDTEELGLLLEFLRRNATLPRYARFLL
GVANKVLEMREEDIRSDEKLRMHIRNLKRMVGEEIQIQHTLQGIQGMISPMLALATR
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgacacctcgaagccgttcttccccacggcgccgaaccaggctctcctcccc
tcccgtggcgccgccgcgcgggcctccctggacggctcctattggcgcgccttccgctcc
tccgagctcgtctccggcgccgacttccccgtcaccgacctcaccttcgccccggccgcc
gccgcctccccgaccctcgccgccgcgtggtccacctccctgcacctcttctccggcgac
ccgctccagccgctccgccggatctccgtcgccggcgacctcgccttctccccctccttc
cgctgcgacggcgccctcctcgccgccggcgacaagaggggcgtcgtccgcgtcttccgc
gccgacaagcccgcggcgggcgccgccctccgcacgctgcgcgcccacgccgccgagacc
cgtgtcgtccggtacccggtcgccggcggggacaagctccacctcttcaccgccggggac
gacgcgctcctcacctactgggacgtgccctcggagacgccggtcttctccgtccccgcc
gcgcaccgggactacatccgcggcggcgcggcctcccccgccgaccataacctcttctcc
acgggctcctacgaccgcagcgtcaaattgtgggatgcccgcacggggaacacaggcccg
tctttgtccttctcccatggggaactggtcgagagcgtgctgttcctgccgtccggcggg
ctgctggccacggctggagggaacgtggtcaagatttgggacgtcattggcggcggccgg
ctcgtgcactctgtggagagccatgtcaagacagtgatggcgctggcgcttgggaagatg
gccaacgccaccggggagacgcggctgcttagtgcgggcattgatgggtatgtgaagatc
tttgattttggcaagcttaagatgacacattcattgcggcacccacagccgctcctgtct
gttgcttgctcgccctgcggcactgtcctggtggctgggtctgcaaaagggaagatttat
atgggcaagaggaagaagaaggctgtggatggggaggatgaagggaagaaggctggcagt
ggtgagattgactgggtatcgccgaagccagagaagccagtgttgaggccaaattactac
aggtacttcctccgtggacagaatgagaaggccaaagagggtgactttgtgattgagaag
cctaagaaggtgaaagttgcagagcatgataagttgctgagaaagttcaggcacaaggat
gctctagtttcagcattggttaaaaacaaccccagaagcgctgtggctgtgatggaggag
ctagttgcaaggagaaagctggtgagatgcatttggaatttggatacagaggaacttggg
cttctgcttgagttccttcgccggaacgcgacattgccaaggtatgcaaggttcttgttg
ggtgtggcaaacaaggtactggagatgcgagaggaggatatccgatctgatgagaagctg
aggatgcacattagaaatctcaagagaatggttggagaagaaatccagatacaacacaca
ttgcaggggattcaaggaatgatatcgcccatgcttgcacttgccaccagatga
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