Panicum virgatum (switchgrass): 120667201
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Entry
120667201 CDS
T07260
Name
(RefSeq) syntaxin-52-like isoform X1
KO
K08503
syntaxin of plants SYP5
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
120667201
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120667201
Membrane trafficking [BR:
pvir04131
]
SNARE
SNAP-25[C] (Qc)
STX8
120667201
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
SNARE
YjcZ
DUF5345
Pox_EPC_I2-L1
DUF2721
V-ATPase_su_f
FAM76
Motif
Other DBs
NCBI-GeneID:
120667201
NCBI-ProteinID:
XP_039803198
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All DBs
Position
3N:complement(9749496..9753371)
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AA seq
231 aa
AA seq
DB search
MASSSDPWVKEYNEASRLADDISTMIADRVSLPQSGPEIMRHTSAIRRKITILGTRLDSL
ESLLTRIPPKSITDKEMHKRQDMLSNLKSKAKQMATSFNMSNFANREDLLGQSKKADDMS
RVAGLDNQGIVGLQRQIMKEQDEGLEKLEETVLSTKHIALAVNEELTLHTRLIDDLEDHV
DVTNSRLQRVQKRLAILNKRTKGGCSCMCLLLSVVAVVILVVIAWLLVKYL
NT seq
696 nt
NT seq
+upstream
nt +downstream
nt
atggcatcatcatcggacccatgggtgaaagagtacaatgaagcatccaggcttgctgat
gacatcagtaccatgattgccgatagagtgtctcttccgcaatcaggcccagaaattatg
cggcatacttcagccatccggagaaaaataactattcttgggactagactggatagcttg
gagtcattgctgaccagaattcctccaaagtcaatcactgacaaggagatgcataagcgc
caagacatgctttccaatctgaagtctaaagcaaaacagatggcgacaagtttcaacatg
tcgaactttgctaacagggaggatcttcttggacagagtaaaaaagcagatgatatgagc
agagttgctggcttagacaaccaaggaattgttggccttcagagacaaattatgaaagag
caagatgagggccttgagaaactggaagagacagtgctgagcacaaagcatattgcatta
gcagtcaatgaagaacttactctgcacacaagattgatagatgaccttgaagatcatgtt
gatgttacaaactcgcgtcttcagcgtgtgcaaaagagactcgcaattctgaacaagcgc
accaaaggtggctgctcgtgcatgtgtctgctgttgtcggtcgttgccgttgtgattctc
gtggtcattgcttggcttctcgtcaagtacctgtaa
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