Panicum virgatum (switchgrass): 120667211
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Entry
120667211 CDS
T07260
Name
(RefSeq) probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2
KO
K11583
serine/threonine-protein phosphatase 2A regulatory subunit B''
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120667211
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120667211
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120667211
03036 Chromosome and associated proteins [BR:
pvir03036
]
120667211
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
120667211
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
120667211
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
120667211
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EF-hand_6
EF-hand_7
EF-hand_1
EF-hand_8
EF-hand_5
SPARC_Ca_bdg
EF-hand_13
IGFBP
Motif
Other DBs
NCBI-GeneID:
120667211
NCBI-ProteinID:
XP_039803210
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All DBs
Position
3N:9834318..9839955
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AA seq
487 aa
AA seq
DB search
MSTASGDGADAGGDGATSAVAAPAGRRIPPASSMPWVRNLRRFVGTGTGLGSEALMELET
KRILLEIFKERQRKSAEAGSIPSFYKKKPEEGSISSRVQRLAKYRFLKKQSELLLNADDL
DAMWVCLRENCVIDDATGAEKMNYEDFCHIATVCTEQIGQKCKRFFSPSNFMKFEKDDSG
RIAILPFYLYVMRTVSLTQARIDMSELDEDSDGFLQPHEMEAYIRGLIPNLAQLRDMPTQ
FVQMYCRIAARKFFFFCDPHRRGKACIKKVLLSNCLQELMELHQESEEEVTDTEQAENWF
SLTSAQRICDMFLALDKDQNGTLGKQELKEYADGTLTEIFIERVFDEHVRRSKVGGVNGR
EMDFESFLDFVLALENKDTPEGLTYLFRCLDLNGRGFLTTADIHILFRDVHQKWIEGGNY
ELCIEDVRDEIWDMVKPADPLRISLQDLLSCKQGGTIASMLIDVRGFWAHDNRENLLQEE
EEQVEEA
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgcctccggcgacggcgcggacgccggcggcgatggggccacctccgcggtg
gcggcgcccgccgggaggcggatcccgccggcctcgtcgatgccgtgggtccgcaacctc
cgccgcttcgtcggcacgggcaccggcctcggatccgaggccctcatggaactggaaaca
aagaggatattgctggagatcttcaaggagcggcagcgaaagagtgctgaagctggttcc
atcccaagtttttacaagaagaaacctgaagaaggatccattagctctagagttcagagg
ttggccaagtacaggtttctgaagaaacaatcagaacttctcttgaatgctgacgatctt
gatgccatgtgggtttgtctaagagaaaattgtgttattgatgatgctactggtgctgaa
aagatgaattatgaagacttctgccatattgccacagtctgcacggagcagattggtcag
aaatgcaaacgtttcttcagcccttcaaactttatgaagtttgagaaggatgattctggg
aggattgccatcctaccattttatctttacgttatgcggacggtctctcttactcaggca
agaatcgacatgagtgaacttgatgaagattctgatggtttccttcagcctcatgaaatg
gaggcatatataagaggactcatccccaatttggcacaattgcgcgacatgcccacccaa
tttgttcaaatgtactgccgcatagctgcacgcaagttctttttcttctgtgatccacac
agacgagggaaagcatgcataaagaaagtattgctgagcaattgtctccaggagcttatg
gaacttcatcaggaaagcgaggaagaggtaactgacaccgagcaggcagaaaattggttt
tccctaacttcagctcagcgcatatgtgatatgtttcttgcactggataaggaccaaaat
ggtaccctgggcaaacaagagctcaaagaatacgcagatggcacgttgactgagattttc
attgaaagagtttttgatgagcatgtccgccggagcaaagttggaggtgtaaacggtcgt
gagatggacttcgaaagcttcctcgattttgttttggctctagaaaacaaagatacccct
gaaggcttgacatatttatttagatgccttgatcttaatggaagggggttcctcacgact
gcagatatccatattctgtttagagatgtacaccagaaatggattgagggtgggaactat
gagctttgcattgaagatgtgagggacgaaatctgggacatggtgaagccggcagatcct
ctcaggatctcgctacaagatcttctttcatgcaagcaaggcgggactatagccagcatg
cttatagatgtgcgtggcttctgggcccatgacaacagggagaaccttctccaggaagag
gaagagcaagtggaagaggcatga
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