Panicum virgatum (switchgrass): 120667216
Help
Entry
120667216 CDS
T07260
Name
(RefSeq) transport inhibitor response 1-like protein Os05g0150500
KO
K14485
transport inhibitor response 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
120667216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120667216
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
120667216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
LRR_At5g56370
F-box_5
LRR_6
F-box-like
LRR_4
F-box
LRR_8
Motif
Other DBs
NCBI-GeneID:
120667216
NCBI-ProteinID:
XP_039803222
LinkDB
All DBs
Position
3N:complement(9875424..9880936)
Genome browser
AA seq
585 aa
AA seq
DB search
MGRGAAAALPPWHALPDEVWEHAFSFLPADSDRGAAAAACRSWLRAERRSRRRLAVANCY
AASPQDAVDRFRSVRAVEVKGKPHFADFGLVPPGWGAAAAPWVAAAADGWPLLEEFSFKR
MVVTDDCLEMIAASFRNFQVLRLVSCEGFSTAGLAAIAAGCRNLKELDLQENEIEDCSIN
WLSLFPESFTSLVTLNFSCLEGDVNIAVLERLVTRCRNLKTLKVNNSIPLDMLASLLRKA
PQIVELGTGRFSADYHLNLFSKLEAAFAGCKSLRRLSGAWDAVPEYLPAFYCVCEGLTSL
NLSYATVRGPELIKFISRCKNLQLLWVMDLIEDHGLAVVASSCNKLQELRVFPSSPFDAA
EQVSLTERGLVVVSASCPMLESVLYFCRRMTNEALITIAKNRPNFTCFRLCIIEPHTPDY
ITHQPLDAGFSAIVESCKGLRRLSVSGLLTDRVFKSIGAHADRLEMLSIAFAGNSDLGLH
YILSGCKSLKKLEIRDCPFGDKPLLANAAKLETMRSLWMSSCSLTLGACRQLARKMPRLS
VEVMNDPRRACPLDSLTDESPVETLYVYRTIAGPRSDTPACVQIV
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgggccgcggcgccgccgccgcgctgccgccgtggcacgctctcccggacgaggtctgg
gagcatgccttctccttcctccccgcggactcggaccggggcgccgccgcggccgcctgc
cgctcctggcttcgcgccgagcgccgctcgcgccgccgcctcgccgtcgccaactgctac
gctgcatccccgcaagacgccgtcgaccggttccggtccgtacgcgccgtcgaggtcaag
ggcaagcctcacttcgcggacttcgggctggtgccgcctggctggggcgctgccgccgcg
ccatgggtcgccgccgcagccgacgggtggccgcttctcgaggagttcagcttcaagcgc
atggtcgtcaccgacgactgcctcgagatgatcgcggcctccttcaggaacttccaggtg
ctccgcctcgtatcctgcgagggcttcagcaccgccggtctcgctgccattgccgccggc
tgcaggaatctaaaagaacttgacctgcaggagaatgagattgaggattgctctattaat
tggctcagtctctttccagaatccttcacttctttggtaactctaaatttttcatgctta
gaaggggatgtcaatatagctgtacttgaacgactagtaaccagatgccgcaacctcaag
actctcaaggtcaacaattctatacctcttgacatgcttgctagcctccttcgcaaggct
cctcagattgtagagctcggaacaggaagattctctgcggattaccatctgaatctcttc
tcaaaacttgaagcagcatttgctggttgtaaaagcctaagaaggctttctggggcttgg
gatgctgttccagagtacctgccagcattttattgcgtatgtgagggcctcacatcacta
aatctgagttatgctaccgtacgaggccctgagctgattaaattcattagcagatgcaaa
aatctgcaactcttatgggttatggatttaattgaggaccacggtcttgctgttgtggca
tcatcttgtaataaactgcaggaattgcgggtcttcccttcttctccttttgatgcagcc
gagcaggtttcattgactgaaagaggtcttgttgttgtctctgccagttgcccaatgttg
gaatcagtcctctacttctgcagacggatgaccaatgaggcccttattaccattgcaaag
aatcggcccaacttcacttgcttccgcctatgcatcatagagccgcacacaccagattac
atcacgcatcagcctcttgatgcaggttttagtgccattgtggaatcatgcaagggcctt
aggcggctttctgtctcaggccttctcacagaccgtgtatttaaatccatcggggcacat
gctgatcgtcttgagatgctttcaatcgccttcgctggcaacagtgacttgggccttcat
tacatcctttcgggctgcaagagtttgaagaagctggagatcagggactgcccatttggt
gataagcctttgctggcaaatgctgccaagctggagacaatgcgatccctttggatgtcg
tcgtgctcactgaccctgggtgcatgcagacagcttgcacgcaagatgccccgccttagt
gtggaggtcatgaatgatcctcgacgggcatgccccttggactcgcttacagatgagagc
cctgtcgagacattgtatgtctatcggacaattgcaggtccaaggtccgacacaccagcc
tgcgtccagattgtttag
DBGET
integrated database retrieval system
